[ome-users] OMERO 5.1-m5 observations

Josh Moore josh at glencoesoftware.com
Fri Apr 17 07:07:23 BST 2015


Hi Paul,

> The steps to reproduce are (from the webclient):
> - Select dataset (with over 50 individual images)
> - Right click dataset and press Delete.
>
> Observe that the dataset is removed from the DOM, but no spinner is
> added to the Activity icon indicating activity.
>
> The images are JPEG images.

We've failed to reproduce this with 5.1.0. Have you re-tried it with
the release version (5.1.0)?

Cheers,
~Josh.


On Thu, Apr 2, 2015 at 5:09 PM, Paul van Schayck <paul at vanschayck.nl> wrote:
> Hi Josh,
>
> On Thu, Apr 2, 2015 at 1:38 PM, Josh Moore <josh at glencoesoftware.com> wrote:
>> Our primary motivation was to reduce the zip of the OMERO.client zip
>> since the requirement to have a Java6 and Java7+ version had made
>> the bundle quite large. It's good to know, though, that someone out
>> there is looking for it. If not having it in the clients bundle is an issue,
>> please let us know.
>
> Makes sense.
>
> Regarding the importers usage. We are actually also adding a top link
> to the webclient with a custom webstart file starting specifically the
> importer.
>
>> Thanks for bringing this to our attention. Unfortunately, getting this into
>> 5.1.0 wasn't possible, but we'll look into it for 5.1.1. Just to be clear, this
>> is the delete of a single data with hundreds of individual images? What
>> file type were they?
>
> The steps to reproduce are (from the webclient):
> - Select dataset (with over 50 individual images)
> - Right click dataset and press Delete.
>
> Observe that the dataset is removed from the DOM, but no spinner is
> added to the Activity icon indicating activity.
>
> The images are JPEG images.
>
>>> - The OMERO.server/var directory is made now by default with the
>>> permissions 700. This bited our apache setup running as www-data. Is
>>> this documentated, and intended?
>>
>> It's certainly intended that the var directory be created with 700 permissions,
>> but there hasn't been any recent change to that behavior. But looking
>> at our docs,
>> it's not as clear as it should be which we'll take care of. The walkthrough[1]
>> does include a chmod step.
>
> Interesting, I hadn't observed this before.
>
> Thanks,
>
> Paul
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