[ome-users] Unable to open lif file

[Mai Tran]

Hi Roger,

I'm new to using Fiji and coding. Can you briefly tell me what I need to do
exactly in Fiji to be able to read my file with the solution. My guess is I
need to append the provided code into my current Bioformat plugins but I
don't know how to access the Bioformat code in window8.

Thank you for your help

mai

On Mon, Apr 13, 2015 at 3:42 AM, Roger Leigh <rleigh at dundee.ac.uk> wrote:

> On 10/04/15 17:53, Mai Tran wrote:
>
>> Hi Roger,
>>
>> I've tried to disable SCIFIO and when open the lif file I got this (I
>> think it's the same error). I forgot to mention before, I've tried on
>> both Mac and PC Fiji
>>
>> java.lang.NumberFormatException: empty String
>> at sun.misc.FloatingDecimal.readJavaFormatString(
>> FloatingDecimal.java:992)
>> at java.lang.Double.valueOf(Double.java:475)
>> at java.lang.Double.<init>(Double.java:567)
>> at loci.formats.in.LIFReader.translateFilterSettings(LIFReader.java:1495)
>> at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1006)
>> at loci.formats.in.LIFReader.initMetadata(LIFReader.java:511)
>> at loci.formats.in.LIFReader.initFile(LIFReader.java:453)
>> at loci.formats.FormatReader.setId(FormatReader.java:1317)
>>          ...
>> I've uploaded file to the link provided. Please let me know if that did
>> not get uploaded properly.
>>
>
> Yes, this uploaded correctly, thanks.  I have taken a look and found a
> problem in the parsing of the Objective NA.  A PR to fix this is open here:
>
>   https://github.com/openmicroscopy/bioformats/pull/1728
>
> If this considered acceptable for merging, this should be in the 5.1.1
> point release.
>
>
>
> Kind regards,
> Roger
>
> --
> Dr Roger Leigh -- Open Microscopy Environment
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
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