[ome-users] Error opening series DICOM images

[Balaji Ramalingam]

Hi,

Thank you for submitting your bug.

We were unable to reproduce the bug with the latest stable release of
Bio-Formats,
http://downloads.openmicroscopy.org/bio-formats/5.0.4/

It would be great if you could check the version of bio-formats you are
using (within ImageJ).

To check (within ImageJ):
Click Help ‹> About Plugins ‹> Bio-Formats PluginsŠ

If the version is outdated , we recommend updating to the latest stable
version (Bio-Formats 5.0.4).
Please let us know if the problem persists post upgrade as well.

Best,
Balaji




__________________
Mr Balaji Ramalingam
Software Developer

OME Team
College of Life Sciences
University of Dundee






On 22/09/2014 16:41, "Leszek Kepinski" <leszek.kepinski at gmail.com> wrote:

>Dear Listers,
>     I have a problem with opening a series of compressed DICOM images
>with Bio-Formats plugin in ImageJ. An error message occurs (see below).
>However, I can open each individual image in a series. The structure of
>the series is Folder (SER0001), Files (IMG0001, IMG0002,etc).
>> ImageJ 1.49h; Java 1.7.0_67 [32-bit]; Windows 7 6.1; 10MB of 640MB (1%)
>>
>> java.lang.IllegalArgumentException: 0 must not be null and positive.
>>     at
>> ome.xml.model.primitives.PositiveInteger.<init>(PositiveInteger.java:52)
>>     at
>> loci.formats.MetadataTools.populatePixelsOnly(MetadataTools.java:277)
>>     at
>>loci.formats.MetadataTools.populateMetadata(MetadataTools.java:238)
>>     at loci.formats.MetadataTools.populatePixels(MetadataTools.java:138)
>>     at loci.formats.MetadataTools.populatePixels(MetadataTools.java:97)
>>     at loci.formats.in.DicomReader.initFile(DicomReader.java:713)
>>     at loci.formats.FormatReader.setId(FormatReader.java:1317)
>>     at
>> loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
>>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
>>     at loci.plugins.in.Importer.showDialogs(Importer.java:141)
>>     at loci.plugins.in.Importer.run(Importer.java:79)
>>     at loci.plugins.LociImporter.run(LociImporter.java:81)
>>     at ij.IJ.runUserPlugIn(IJ.java:202)
>>     at ij.IJ.runPlugIn(IJ.java:166)
>>     at ij.Executer.runCommand(Executer.java:131)
>>     at ij.Executer.run(Executer.java:64)
>>     at java.lang.Thread.run(Unknown Source)
>
>Regards,
>Leszek
>
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