[ome-users] Error opening series DICOM images

Leszek Kepinski leszek.kepinski at gmail.com
Mon Sep 22 16:41:34 BST 2014


Dear Listers,
     I have a problem with opening a series of compressed DICOM images 
with Bio-Formats plugin in ImageJ. An error message occurs (see below).  
However, I can open each individual image in a series. The structure of 
the series is Folder (SER0001), Files (IMG0001, IMG0002,etc).
> ImageJ 1.49h; Java 1.7.0_67 [32-bit]; Windows 7 6.1; 10MB of 640MB (1%)
>
> java.lang.IllegalArgumentException: 0 must not be null and positive.
>     at 
> ome.xml.model.primitives.PositiveInteger.<init>(PositiveInteger.java:52)
>     at 
> loci.formats.MetadataTools.populatePixelsOnly(MetadataTools.java:277)
>     at loci.formats.MetadataTools.populateMetadata(MetadataTools.java:238)
>     at loci.formats.MetadataTools.populatePixels(MetadataTools.java:138)
>     at loci.formats.MetadataTools.populatePixels(MetadataTools.java:97)
>     at loci.formats.in.DicomReader.initFile(DicomReader.java:713)
>     at loci.formats.FormatReader.setId(FormatReader.java:1317)
>     at 
> loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
>     at loci.plugins.in.Importer.showDialogs(Importer.java:141)
>     at loci.plugins.in.Importer.run(Importer.java:79)
>     at loci.plugins.LociImporter.run(LociImporter.java:81)
>     at ij.IJ.runUserPlugIn(IJ.java:202)
>     at ij.IJ.runPlugIn(IJ.java:166)
>     at ij.Executer.runCommand(Executer.java:131)
>     at ij.Executer.run(Executer.java:64)
>     at java.lang.Thread.run(Unknown Source)

Regards,
Leszek




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