[ome-users] Upgrade problem

Kotecki, Jason Jason.Kotecki at vai.org
Thu Sep 11 14:56:27 BST 2014


Thanks for your help. I have verified the permissions and that is not the issue. I downloaded version 5.0.3 and I am experiencing the same problem as 5.0.4. The Blitz.log file is not created. Did something change from version 5.0.2 that the services start differently? I noticed that there is a new xml file in the versions after 5.0.2, /etc/grid/generated.xml. This file has a line related to blitz with the word 'REPLACEME'. Is this something I need to change?

<property name="REPLACEMENT:blitz" value="REPLACEME" />

Thanks,
Jason

From: Kenneth Gillen [mailto:k.h.gillen at dundee.ac.uk]
Sent: Wednesday, September 10, 2014 10:19 AM
To: Kotecki, Jason; ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Upgrade problem

The only thing I've had trouble with, using that exact workflow, is not adding the OMERO service user's permissions to access the new folder c:\OMERO.server after creating it for the latest OMERO upgrade - worth checking that.

Best,

Kenny

--

Kenneth Gillen
OME System Administrator

Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Tel: +44 (0) 1382 386364
Skype: kennethgillen

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From: <Kotecki>, Jason <Jason.Kotecki at vai.org<mailto:Jason.Kotecki at vai.org>>
Date: Wednesday, 10 September 2014 15:11
To: "ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>" <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: [ome-users] Upgrade problem

Hello, I recently attempted the upgrade from 5.0.2 to 5.0.4. I'm running on a Windows server using IIS. The process I did was:

1.       Backup the database

2.       Ran 'omero admin stop'

3.       Ran 'omero web iis -remove'

4.       Renamed the 'Omero.server' folder to 'Omero.server.OLD'

5.       Extracted the 'OMERO.server-5.0.4-ice34-b43.zip' to 'Omero.server.

6.       Copied the '/etc/grid/config.xml' file from my old folder to the new folder.

7.       Ran 'omero web iis'

8.       Ran 'omero admin start'.

Here is the output of that start command:

C:\OMERO.server\bin>omero admin start
No descriptor given. Using etc\grid\windefault.xml
Installing OMERO.master Windows service.
Successfully installed OMERO.master Windows service.
Starting OMERO.master Windows service.
Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 300 seconds
Calling "stop" on remaining components
OMERO.master service deleted.
Waiting on shutdown. Use CTRL-C to exit
C:\OMERO.server\bin>

I also attached the results of the 'omero admin diagnostics' command.

Thanks,
Jason Kotecki


The University of Dundee is a registered Scottish Charity, No: SC015096
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