[ome-users] CZI: wrong number of timepoints

Roger Leigh rleigh at dundee.ac.uk
Mon Sep 8 13:54:55 BST 2014


On 07/09/14 15:32, Maier, Lorenz wrote:

> even with the "open files individually" option of Fiji, I have a .czi
> image that is reported to have 4 timepoints, but actually it has only one.

Dear Lorenz,

Thanks for uploading the image.  If you look at the image it's even
stranger--the CZI reports T=18 and S=140, though this isn't reflected
when you look at the dimensionality in Zen Blue.  Which version of Zen
was used to acquire and save the image?  Did any postprocessing take
place after acquisition e.g. reduction of the T and/or S dimensions?

I have opened a ticket for this, adding you as a CC:
   https://trac.openmicroscopy.org.uk/ome/ticket/12556


Thanks,
Roger

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364

The University of Dundee is a registered Scottish Charity, No: SC015096



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