[ome-users] bio-formats broke in latest Fiji

Aryeh Weiss aryeh at cc.huji.ac.il
Wed Sep 3 17:58:01 BST 2014


On 9/3/14, 11:23 AM, Balaji Ramalingam wrote:
> Hi,
>
> Thank you for the detailed updates and files on the QA server.
> We were able to reproduce the bug.
>
> I have created a ticket for the same ,
> https://trac.openmicroscopy.org.uk/ome/ticket/12548
> (have added your id to the CC list)
>
>
> and will get looked into at the earliest.
>
> Best,
> Balaji
>
Thank you for your attention to this.

Best regards
--aryeh
>
>
> On 03/09/2014 14:20, "Aryeh Weiss" <aryeh at cc.huji.ac.il> wrote:
>
>> On 9/1/14, 11:38 AM, Balaji Ramalingam wrote:
>>> Hi,
>>>
>>> Thank you for reporting your bug.
>>> We were not able to spot the uploaded file *control003.nd2* in the Fiji
>>> site and we were unable to reproduce the bug, with the nd2 files you had
>>> previously submitted on our QA server,
>>>
>>>
>>> It would be great if you could upload the problematic files to our QA
>>> server,
>>> https://www.openmicroscopy.org/qa2/qa/upload/
>>> (maximum file size <=2GB).
>>>
>>> Please let us know if your file size exceeds the above limit, in which
>>> case we will share our FTP credentials.
>>>
>>> Thanks again.
>>>
>>> Best,
>>> Balaji
>>>
>>>
>>>
>> I will not be able to attempt another upload of the 2GB image until
>> Sunday.
>> However, I can add the following information about this problem I have
>> reading XYZ multi-series ND2.
>>
>> 1. It is still a problem in version 5.0.4
>> 2. Replacing formats-gpl-5.0.4.jar with formats-gpl-5.0.2.jar, while
>> leaving the others at 5.0.4, enables the ND2 file to be read properly,
>> so the problem appears to be in formats-gpl-5.0.4.jar
>>
>> Best regards
>> --aryeh
>>
>> --
>> Aryeh Weiss
>> Faculty of Engineering
>> Bar Ilan University
>> Ramat Gan 52900 Israel
>>
>> Ph:  972-3-5317638
>> FAX: 972-3-7384051
>>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>


-- 
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051




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