[ome-users] bio-formats broke in latest Fiji

Aryeh Weiss aryeh at cc.huji.ac.il
Wed Sep 3 14:20:20 BST 2014


On 9/1/14, 11:38 AM, Balaji Ramalingam wrote:
> Hi,
>
> Thank you for reporting your bug.
> We were not able to spot the uploaded file *control003.nd2* in the Fiji
> site and we were unable to reproduce the bug, with the nd2 files you had
> previously submitted on our QA server,
>
>
> It would be great if you could upload the problematic files to our QA
> server,
> https://www.openmicroscopy.org/qa2/qa/upload/
> (maximum file size <=2GB).
>
> Please let us know if your file size exceeds the above limit, in which
> case we will share our FTP credentials.
>
> Thanks again.
>
> Best,
> Balaji
>
>
>
I will not be able to attempt another upload of the 2GB image until Sunday.
However, I can add the following information about this problem I have 
reading XYZ multi-series ND2.

1. It is still a problem in version 5.0.4
2. Replacing formats-gpl-5.0.4.jar with formats-gpl-5.0.2.jar, while 
leaving the others at 5.0.4, enables the ND2 file to be read properly, 
so the problem appears to be in formats-gpl-5.0.4.jar

Best regards
--aryeh

-- 
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051




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