[ome-users] OMERO.web installation under Ubuntu 14
unai_lorenzo at ehu.es
unai_lorenzo at ehu.es
Wed Oct 1 11:52:34 BST 2014
Hi Simon,
I'm using Ubuntu 14.04 LTS.
I've been following OMERO.server installation
(http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-installation.html), OMERO.server Linux walkthrough (http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-linux-walkthrough.html), and OMERO.web deployment
(http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/install-web.html).
I generated the nginx configuration with 'bin/omero web config nginx
--system'.
The first lines that the command returned are:
listen 8080;
server_name $hostname;
I installed nginx at the same time as Ice, Java and Postgres. I used
the following command (as suggested in the walkthrough):
apt-get -y install \
unzip \
wget \
python-{imaging,matplotlib,numpy,pip,scipy,tables,virtualenv} \
openjdk-7-jre-headless \,
ice-services python-zeroc-ice \
postgresql \
nginx
Thanks for your help,
Unai
Simon Li <s.p.li at dundee.ac.uk> escribió:
> Hi Unai
>
> What operating system and version are you using? Which set of instructions
> were you following- the ones from
> https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/install-w
> eb.html or the walkthrough at
> https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-li
> nux-walkthrough.html ?
>
> Did you generate your nginx config with 'bin/omero web config nginx
> --system’? And finally, how did you install this nginx config?
>
> Thanks
>
> Simon
>
> On 30/09/2014 16:25, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>
>> Hi Simon,
>>
>> Unluckily your suggestions didn't work either.
>>
>> When I try to access OMERO.web on port 80 I can see the following message:
>> Welcome to nginx!
>> If you see this page, the nginx web server is successfully installed
>> and working. Further configuration is required.
>>
>> And if I try to access OMERO.web on port 8080 the address is not
>> valid. Does it mean that I should configure Apache or Nginx to listen
>> to 8080 port?
>>
>> Thanks again!!
>> Unai
>>
>>
>> Simon Li <s.p.li at dundee.ac.uk> escribió:
>>
>>> Hi Unai
>>>
>>> Could you try unsetting all of your omero.web.* configuration options,
>>> regenerate your nginx or apache configuration files, restart OMERO and
>>> OMERO.web, and seeing if that works?
>>>
>>> Thanks
>>>
>>> Simon
>>>
>>> On 30/09/2014 08:34, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>>>
>>>> Dear Simon,
>>>>
>>>> I'm using nginx/apache.
>>>> I've also tried to access OMERO.web on the ports you suggested but it
>>>> didn't work either.
>>>> This is the output of `bin/omero config get':
>>>>
>>>> omero.data.dir=/home/jribecarios/OMERO
>>>> omero.db.name=omero_database
>>>> omero.db.pass=db_password
>>>> omero.db.user=db_user
>>>> omero.web.application_server=fastcgi
>>>> omero.web.application_server.host=localhost
>>>> omero.web.application_server.port=4080
>>>> omero.web.force_script_name=/omero
>>>> omero.web.static_url=/omero/static/
>>>> jribecarios at jribecarios:~/omero/OMERO.server-5.0.4-ice35-b43$
>>>>
>>>>
>>>> I hope it helps.
>>>>
>>>> Many thanks,
>>>> Unai
>>>>
>>>>
>>>> Simon Li <s.p.li at dundee.ac.uk> escribió:
>>>>
>>>>> Hi Unai
>>>>>
>>>>> Are you using the development web server, or nginx/apache? If it¹s the
>>>>> latter then OMERO.web should be accessible on either port 80 or 8080
>>>>> depending on your configuration, port 4080 is used for internal
>>>>> communication.
>>>>>
>>>>> If this doesn¹t solve your problem could you paste the output of
>>>>> `bin/omero config get`?
>>>>>
>>>>> Thanks
>>>>>
>>>>> Simon
>>>>>
>>>>> On 29/09/2014 16:58, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es>
>>>>> wrote:
>>>>>
>>>>>> Dear OME users,
>>>>>>
>>>>>> I am trying to install OMERO.web under Ubuntu 14. I've been following
>>>>>> all the instructions included in the web page, and everything seems
>>>>>> to
>>>>>> be OK: I could start the server, and the OMERO.web client.
>>>>>>
>>>>>> $ bin/omero web start
>>>>>>
>>>>>> 0 static files copied, 816 unmodified.
>>>>>> Starting OMERO.web... [OK]
>>>>>>
>>>>>>
>>>>>> But I can't access OMERO.webadmin on the following address
>>>>>> http://localhost:4080.
>>>>>>
>>>>>> Any guess about what's wrong? Could it be the something related to
>>>>>> the
>>>>>> the firewall and the TCP ports?
>>>>>>
>>>>>>
>>>>>> Here you will find the diagnostics:
>>>>>>
>>>>>>
>>>>>>
>>>>>> ======================================================================
>>>>>> ==
>>>>>> ==
>>>>>> ======
>>>>>> OMERO Diagnostics 5.0.4-ice35-b43
>>>>>>
>>>>>>
>>>>>> ======================================================================
>>>>>> ==
>>>>>> ==
>>>>>> ======
>>>>>>
>>>>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
>>>>>> 5.0.5 See http://trac.openmicroscopy.org.uk/omero for the latest
>>>>>> version
>>>>>>
>>>>>> Commands: java -version 1.7.0 (/usr/bin/java)
>>>>>> Commands: python -V 2.7.6
>>>>>> (/usr/bin/python)
>>>>>> Commands: icegridnode --version 3.5.1
>>>>>> (/usr/bin/icegridnode)
>>>>>> Commands: icegridadmin --version 3.5.1
>>>>>> (/usr/bin/icegridadmin)
>>>>>> Commands: psql --version 9.3.5 (/usr/bin/psql)
>>>>>>
>>>>>> Server: icegridnode running
>>>>>> Server: Blitz-0 active (pid = 4371,
>>>>>> enabled)
>>>>>> Server: DropBox active (pid = 4403,
>>>>>> enabled)
>>>>>> Server: FileServer active (pid = 4404,
>>>>>> enabled)
>>>>>> Server: Indexer-0 active (pid = 4383,
>>>>>> enabled)
>>>>>> Server: MonitorServer active (pid = 4387,
>>>>>> enabled)
>>>>>> Server: OMERO.Glacier2 active (pid = 4394,
>>>>>> enabled)
>>>>>> Server: OMERO.IceStorm active (pid = 4420,
>>>>>> enabled)
>>>>>> Server: PixelData-0 active (pid = 4410,
>>>>>> enabled)
>>>>>> Server: Processor-0 active (pid = 4416,
>>>>>> enabled)
>>>>>> Server: Tables-0 active (pid = 4412,
>>>>>> enabled)
>>>>>> Server: TestDropBox inactive (enabled)
>>>>>>
>>>>>> OMERO: SSL port 4064
>>>>>> OMERO: TCP port 4063
>>>>>>
>>>>>> Log dir:
>>>>>> /home/jribecarios/omero/OMERO.server-5.0.4-ice35-b43/var/log exists
>>>>>>
>>>>>> Log files: Blitz-0.log 672.0 KB errors=12
>>>>>> warnings=6
>>>>>> Log files: DropBox.log 3.0 KB errors=0
>>>>>> warnings=1
>>>>>> Log files: FileServer.log 0.0 KB
>>>>>> Log files: Indexer-0.log 21.0 KB errors=13
>>>>>> warnings=0
>>>>>> Log files: MonitorServer.log 2.0 KB
>>>>>> Log files: OMEROweb.log 0.0 KB
>>>>>> Log files: OMEROweb_request.log 0.0 KB
>>>>>> Log files: PixelData-0.log 25.0 KB errors=18
>>>>>> warnings=1
>>>>>> Log files: Processor-0.log 2.0 KB errors=0
>>>>>> warnings=1
>>>>>> Log files: Tables-0.log 2.0 KB
>>>>>> Log files: TestDropBox.log n/a
>>>>>> Log files: master.err 2.0 KB errors=0
>>>>>> warnings=4
>>>>>> Log files: master.out 0.0 KB
>>>>>> Log files: Total size 0.73 MB
>>>>>>
>>>>>>
>>>>>> Environment:OMERO_HOME=(unset)
>>>>>> Environment:OMERO_NODE=(unset)
>>>>>> Environment:OMERO_MASTER=(unset)
>>>>>> Environment:OMERO_TEMPDIR=(unset)
>>>>>>
>>>>>>
>>>>>> Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sb
>>>>>> in
>>>>>> :/
>>>>>> bin:/usr/games:/usr/local/games
>>>>>> Environment:PYTHONPATH=(unset)
>>>>>> Environment:ICE_HOME=(unset)
>>>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>>>
>>>>>> OMERO data dir: '/home/jribecarios/OMERO'Exists? TrueIs writable?
>>>>>> True
>>>>>> OMERO temp dir: '/home/jribecarios/omero/tmp'Exists? TrueIs
>>>>>> writable? True (Size: 0)
>>>>>> OMERO.web status... [RUNNING] (PID 11366)
>>>>>>
>>>>>>
>>>>>> Many thanks in advance!!
>>>>>>
>>>>>> Best regards,
>>>>>> Unai
>>>>>>
>>>>>> _______________________________________________
>>>>>> ome-users mailing list
>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>
>>>>>
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>>>>> SC015096
>>>>
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>>>>
>>>
>>>
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>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
> Esta cabecera ha sido añadida automáticamente por la Vicegerencia de las TIC:
> --------------------------------------------------------------------------------
> ATENCION!! Este correo contiene la palabra "contraseña" y puede
> tratarse de un fraude.
> No proporcione nunca sus credenciales por correo electrónico.
> Si tiene alguna duda consulte con el CAU (154400).
> UPV/EHU, Vicegerencia de las TIC
>
> ERNE!! Mezu honek "contraseña" hitza dauka eta iruzurrezko mezua
> izan daiteke.
> Ez eman inoiz zure pasahitza posta elektronikoaren bidez.
> Zalantzarik izanez gero deitu BAZren telefonora (154400)
> UPV/EHU, IKT Gerenteordetza
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