[ome-users] OMERO.web installation under Ubuntu 14
Simon Li
s.p.li at dundee.ac.uk
Wed Oct 1 16:20:43 BST 2014
Can I just check you copied or symlinked the config to
/etc/nginx/sites-enabled, and restarted nginx?
Simon
On 01/10/2014 11:52, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>Hi Simon,
>I'm using Ubuntu 14.04 LTS.
>
>I've been following OMERO.server installation
>(http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-i
>nstallation.html), OMERO.server Linux walkthrough
>(http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-l
>inux-walkthrough.html), and OMERO.web deployment
>(http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/install-
>web.html).
>
>I generated the nginx configuration with 'bin/omero web config nginx
>--system'.
>The first lines that the command returned are:
>listen 8080;
>server_name $hostname;
>
>
>I installed nginx at the same time as Ice, Java and Postgres. I used
>the following command (as suggested in the walkthrough):
>
>apt-get -y install \
> unzip \
> wget \
> python-{imaging,matplotlib,numpy,pip,scipy,tables,virtualenv} \
> openjdk-7-jre-headless \,
> ice-services python-zeroc-ice \
> postgresql \
> nginx
>
>Thanks for your help,
>Unai
>
>Simon Li <s.p.li at dundee.ac.uk> escribió:
>
>> Hi Unai
>>
>> What operating system and version are you using? Which set of
>>instructions
>> were you following- the ones from
>>
>>https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/install
>>-w
>> eb.html or the walkthrough at
>>
>>https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-
>>li
>> nux-walkthrough.html ?
>>
>> Did you generate your nginx config with 'bin/omero web config nginx
>> --system’? And finally, how did you install this nginx config?
>>
>> Thanks
>>
>> Simon
>>
>> On 30/09/2014 16:25, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>>
>>> Hi Simon,
>>>
>>> Unluckily your suggestions didn't work either.
>>>
>>> When I try to access OMERO.web on port 80 I can see the following
>>>message:
>>> Welcome to nginx!
>>> If you see this page, the nginx web server is successfully installed
>>> and working. Further configuration is required.
>>>
>>> And if I try to access OMERO.web on port 8080 the address is not
>>> valid. Does it mean that I should configure Apache or Nginx to listen
>>> to 8080 port?
>>>
>>> Thanks again!!
>>> Unai
>>>
>>>
>>> Simon Li <s.p.li at dundee.ac.uk> escribió:
>>>
>>>> Hi Unai
>>>>
>>>> Could you try unsetting all of your omero.web.* configuration options,
>>>> regenerate your nginx or apache configuration files, restart OMERO and
>>>> OMERO.web, and seeing if that works?
>>>>
>>>> Thanks
>>>>
>>>> Simon
>>>>
>>>> On 30/09/2014 08:34, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es>
>>>>wrote:
>>>>
>>>>> Dear Simon,
>>>>>
>>>>> I'm using nginx/apache.
>>>>> I've also tried to access OMERO.web on the ports you suggested but it
>>>>> didn't work either.
>>>>> This is the output of `bin/omero config get':
>>>>>
>>>>> omero.data.dir=/home/jribecarios/OMERO
>>>>> omero.db.name=omero_database
>>>>> omero.db.pass=db_password
>>>>> omero.db.user=db_user
>>>>> omero.web.application_server=fastcgi
>>>>> omero.web.application_server.host=localhost
>>>>> omero.web.application_server.port=4080
>>>>> omero.web.force_script_name=/omero
>>>>> omero.web.static_url=/omero/static/
>>>>> jribecarios at jribecarios:~/omero/OMERO.server-5.0.4-ice35-b43$
>>>>>
>>>>>
>>>>> I hope it helps.
>>>>>
>>>>> Many thanks,
>>>>> Unai
>>>>>
>>>>>
>>>>> Simon Li <s.p.li at dundee.ac.uk> escribió:
>>>>>
>>>>>> Hi Unai
>>>>>>
>>>>>> Are you using the development web server, or nginx/apache? If it¹s
>>>>>>the
>>>>>> latter then OMERO.web should be accessible on either port 80 or 8080
>>>>>> depending on your configuration, port 4080 is used for internal
>>>>>> communication.
>>>>>>
>>>>>> If this doesn¹t solve your problem could you paste the output of
>>>>>> `bin/omero config get`?
>>>>>>
>>>>>> Thanks
>>>>>>
>>>>>> Simon
>>>>>>
>>>>>> On 29/09/2014 16:58, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es>
>>>>>> wrote:
>>>>>>
>>>>>>> Dear OME users,
>>>>>>>
>>>>>>> I am trying to install OMERO.web under Ubuntu 14. I've been
>>>>>>>following
>>>>>>> all the instructions included in the web page, and everything seems
>>>>>>> to
>>>>>>> be OK: I could start the server, and the OMERO.web client.
>>>>>>>
>>>>>>> $ bin/omero web start
>>>>>>>
>>>>>>> 0 static files copied, 816 unmodified.
>>>>>>> Starting OMERO.web... [OK]
>>>>>>>
>>>>>>>
>>>>>>> But I can't access OMERO.webadmin on the following address
>>>>>>> http://localhost:4080.
>>>>>>>
>>>>>>> Any guess about what's wrong? Could it be the something related to
>>>>>>> the
>>>>>>> the firewall and the TCP ports?
>>>>>>>
>>>>>>>
>>>>>>> Here you will find the diagnostics:
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>====================================================================
>>>>>>>==
>>>>>>> ==
>>>>>>> ==
>>>>>>> ======
>>>>>>> OMERO Diagnostics 5.0.4-ice35-b43
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>====================================================================
>>>>>>>==
>>>>>>> ==
>>>>>>> ==
>>>>>>> ======
>>>>>>>
>>>>>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
>>>>>>> 5.0.5 See http://trac.openmicroscopy.org.uk/omero for the latest
>>>>>>> version
>>>>>>>
>>>>>>> Commands: java -version 1.7.0
>>>>>>>(/usr/bin/java)
>>>>>>> Commands: python -V 2.7.6
>>>>>>> (/usr/bin/python)
>>>>>>> Commands: icegridnode --version 3.5.1
>>>>>>> (/usr/bin/icegridnode)
>>>>>>> Commands: icegridadmin --version 3.5.1
>>>>>>> (/usr/bin/icegridadmin)
>>>>>>> Commands: psql --version 9.3.5
>>>>>>>(/usr/bin/psql)
>>>>>>>
>>>>>>> Server: icegridnode running
>>>>>>> Server: Blitz-0 active (pid = 4371,
>>>>>>> enabled)
>>>>>>> Server: DropBox active (pid = 4403,
>>>>>>> enabled)
>>>>>>> Server: FileServer active (pid = 4404,
>>>>>>> enabled)
>>>>>>> Server: Indexer-0 active (pid = 4383,
>>>>>>> enabled)
>>>>>>> Server: MonitorServer active (pid = 4387,
>>>>>>> enabled)
>>>>>>> Server: OMERO.Glacier2 active (pid = 4394,
>>>>>>> enabled)
>>>>>>> Server: OMERO.IceStorm active (pid = 4420,
>>>>>>> enabled)
>>>>>>> Server: PixelData-0 active (pid = 4410,
>>>>>>> enabled)
>>>>>>> Server: Processor-0 active (pid = 4416,
>>>>>>> enabled)
>>>>>>> Server: Tables-0 active (pid = 4412,
>>>>>>> enabled)
>>>>>>> Server: TestDropBox inactive (enabled)
>>>>>>>
>>>>>>> OMERO: SSL port 4064
>>>>>>> OMERO: TCP port 4063
>>>>>>>
>>>>>>> Log dir:
>>>>>>> /home/jribecarios/omero/OMERO.server-5.0.4-ice35-b43/var/log exists
>>>>>>>
>>>>>>> Log files: Blitz-0.log 672.0 KB errors=12
>>>>>>> warnings=6
>>>>>>> Log files: DropBox.log 3.0 KB errors=0
>>>>>>> warnings=1
>>>>>>> Log files: FileServer.log 0.0 KB
>>>>>>> Log files: Indexer-0.log 21.0 KB errors=13
>>>>>>> warnings=0
>>>>>>> Log files: MonitorServer.log 2.0 KB
>>>>>>> Log files: OMEROweb.log 0.0 KB
>>>>>>> Log files: OMEROweb_request.log 0.0 KB
>>>>>>> Log files: PixelData-0.log 25.0 KB errors=18
>>>>>>> warnings=1
>>>>>>> Log files: Processor-0.log 2.0 KB errors=0
>>>>>>> warnings=1
>>>>>>> Log files: Tables-0.log 2.0 KB
>>>>>>> Log files: TestDropBox.log n/a
>>>>>>> Log files: master.err 2.0 KB errors=0
>>>>>>> warnings=4
>>>>>>> Log files: master.out 0.0 KB
>>>>>>> Log files: Total size 0.73 MB
>>>>>>>
>>>>>>>
>>>>>>> Environment:OMERO_HOME=(unset)
>>>>>>> Environment:OMERO_NODE=(unset)
>>>>>>> Environment:OMERO_MASTER=(unset)
>>>>>>> Environment:OMERO_TEMPDIR=(unset)
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/
>>>>>>>sb
>>>>>>> in
>>>>>>> :/
>>>>>>> bin:/usr/games:/usr/local/games
>>>>>>> Environment:PYTHONPATH=(unset)
>>>>>>> Environment:ICE_HOME=(unset)
>>>>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>>>>
>>>>>>> OMERO data dir: '/home/jribecarios/OMERO'Exists? TrueIs writable?
>>>>>>> True
>>>>>>> OMERO temp dir: '/home/jribecarios/omero/tmp'Exists? TrueIs
>>>>>>> writable? True (Size: 0)
>>>>>>> OMERO.web status... [RUNNING] (PID 11366)
>>>>>>>
>>>>>>>
>>>>>>> Many thanks in advance!!
>>>>>>>
>>>>>>> Best regards,
>>>>>>> Unai
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> ome-users mailing list
>>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>>
>>>>>>
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>>>>>
>>>>
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>> No proporcione nunca sus credenciales por correo electrónico.
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>>
>> ERNE!! Mezu honek "contraseña" hitza dauka eta iruzurrezko mezua
>> izan daiteke.
>> Ez eman inoiz zure pasahitza posta elektronikoaren bidez.
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