[ome-users] OMERO.web installation under Ubuntu 14
Simon Li
s.p.li at dundee.ac.uk
Wed Oct 1 09:54:13 BST 2014
Hi Unai
What operating system and version are you using? Which set of instructions
were you following- the ones from
https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/install-w
eb.html or the walkthrough at
https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-li
nux-walkthrough.html ?
Did you generate your nginx config with 'bin/omero web config nginx
--system’? And finally, how did you install this nginx config?
Thanks
Simon
On 30/09/2014 16:25, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>Hi Simon,
>
>Unluckily your suggestions didn't work either.
>
>When I try to access OMERO.web on port 80 I can see the following message:
>Welcome to nginx!
>If you see this page, the nginx web server is successfully installed
>and working. Further configuration is required.
>
>And if I try to access OMERO.web on port 8080 the address is not
>valid. Does it mean that I should configure Apache or Nginx to listen
>to 8080 port?
>
>Thanks again!!
>Unai
>
>
>Simon Li <s.p.li at dundee.ac.uk> escribió:
>
>> Hi Unai
>>
>> Could you try unsetting all of your omero.web.* configuration options,
>> regenerate your nginx or apache configuration files, restart OMERO and
>> OMERO.web, and seeing if that works?
>>
>> Thanks
>>
>> Simon
>>
>> On 30/09/2014 08:34, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es> wrote:
>>
>>> Dear Simon,
>>>
>>> I'm using nginx/apache.
>>> I've also tried to access OMERO.web on the ports you suggested but it
>>> didn't work either.
>>> This is the output of `bin/omero config get':
>>>
>>> omero.data.dir=/home/jribecarios/OMERO
>>> omero.db.name=omero_database
>>> omero.db.pass=db_password
>>> omero.db.user=db_user
>>> omero.web.application_server=fastcgi
>>> omero.web.application_server.host=localhost
>>> omero.web.application_server.port=4080
>>> omero.web.force_script_name=/omero
>>> omero.web.static_url=/omero/static/
>>> jribecarios at jribecarios:~/omero/OMERO.server-5.0.4-ice35-b43$
>>>
>>>
>>> I hope it helps.
>>>
>>> Many thanks,
>>> Unai
>>>
>>>
>>> Simon Li <s.p.li at dundee.ac.uk> escribió:
>>>
>>>> Hi Unai
>>>>
>>>> Are you using the development web server, or nginx/apache? If it¹s the
>>>> latter then OMERO.web should be accessible on either port 80 or 8080
>>>> depending on your configuration, port 4080 is used for internal
>>>> communication.
>>>>
>>>> If this doesn¹t solve your problem could you paste the output of
>>>> `bin/omero config get`?
>>>>
>>>> Thanks
>>>>
>>>> Simon
>>>>
>>>> On 29/09/2014 16:58, "unai_lorenzo at ehu.es" <unai_lorenzo at ehu.es>
>>>>wrote:
>>>>
>>>>> Dear OME users,
>>>>>
>>>>> I am trying to install OMERO.web under Ubuntu 14. I've been following
>>>>> all the instructions included in the web page, and everything seems
>>>>>to
>>>>> be OK: I could start the server, and the OMERO.web client.
>>>>>
>>>>> $ bin/omero web start
>>>>>
>>>>> 0 static files copied, 816 unmodified.
>>>>> Starting OMERO.web... [OK]
>>>>>
>>>>>
>>>>> But I can't access OMERO.webadmin on the following address
>>>>> http://localhost:4080.
>>>>>
>>>>> Any guess about what's wrong? Could it be the something related to
>>>>>the
>>>>> the firewall and the TCP ports?
>>>>>
>>>>>
>>>>> Here you will find the diagnostics:
>>>>>
>>>>>
>>>>>
>>>>>======================================================================
>>>>>==
>>>>> ==
>>>>> ======
>>>>> OMERO Diagnostics 5.0.4-ice35-b43
>>>>>
>>>>>
>>>>>======================================================================
>>>>>==
>>>>> ==
>>>>> ======
>>>>>
>>>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
>>>>> 5.0.5 See http://trac.openmicroscopy.org.uk/omero for the latest
>>>>> version
>>>>>
>>>>> Commands: java -version 1.7.0 (/usr/bin/java)
>>>>> Commands: python -V 2.7.6
>>>>>(/usr/bin/python)
>>>>> Commands: icegridnode --version 3.5.1
>>>>> (/usr/bin/icegridnode)
>>>>> Commands: icegridadmin --version 3.5.1
>>>>> (/usr/bin/icegridadmin)
>>>>> Commands: psql --version 9.3.5 (/usr/bin/psql)
>>>>>
>>>>> Server: icegridnode running
>>>>> Server: Blitz-0 active (pid = 4371,
>>>>>enabled)
>>>>> Server: DropBox active (pid = 4403,
>>>>>enabled)
>>>>> Server: FileServer active (pid = 4404,
>>>>>enabled)
>>>>> Server: Indexer-0 active (pid = 4383,
>>>>>enabled)
>>>>> Server: MonitorServer active (pid = 4387,
>>>>>enabled)
>>>>> Server: OMERO.Glacier2 active (pid = 4394,
>>>>>enabled)
>>>>> Server: OMERO.IceStorm active (pid = 4420,
>>>>>enabled)
>>>>> Server: PixelData-0 active (pid = 4410,
>>>>>enabled)
>>>>> Server: Processor-0 active (pid = 4416,
>>>>>enabled)
>>>>> Server: Tables-0 active (pid = 4412,
>>>>>enabled)
>>>>> Server: TestDropBox inactive (enabled)
>>>>>
>>>>> OMERO: SSL port 4064
>>>>> OMERO: TCP port 4063
>>>>>
>>>>> Log dir:
>>>>> /home/jribecarios/omero/OMERO.server-5.0.4-ice35-b43/var/log exists
>>>>>
>>>>> Log files: Blitz-0.log 672.0 KB errors=12
>>>>> warnings=6
>>>>> Log files: DropBox.log 3.0 KB errors=0
>>>>> warnings=1
>>>>> Log files: FileServer.log 0.0 KB
>>>>> Log files: Indexer-0.log 21.0 KB errors=13
>>>>> warnings=0
>>>>> Log files: MonitorServer.log 2.0 KB
>>>>> Log files: OMEROweb.log 0.0 KB
>>>>> Log files: OMEROweb_request.log 0.0 KB
>>>>> Log files: PixelData-0.log 25.0 KB errors=18
>>>>> warnings=1
>>>>> Log files: Processor-0.log 2.0 KB errors=0
>>>>> warnings=1
>>>>> Log files: Tables-0.log 2.0 KB
>>>>> Log files: TestDropBox.log n/a
>>>>> Log files: master.err 2.0 KB errors=0
>>>>> warnings=4
>>>>> Log files: master.out 0.0 KB
>>>>> Log files: Total size 0.73 MB
>>>>>
>>>>>
>>>>> Environment:OMERO_HOME=(unset)
>>>>> Environment:OMERO_NODE=(unset)
>>>>> Environment:OMERO_MASTER=(unset)
>>>>> Environment:OMERO_TEMPDIR=(unset)
>>>>>
>>>>>
>>>>>Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sb
>>>>>in
>>>>> :/
>>>>> bin:/usr/games:/usr/local/games
>>>>> Environment:PYTHONPATH=(unset)
>>>>> Environment:ICE_HOME=(unset)
>>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>>
>>>>> OMERO data dir: '/home/jribecarios/OMERO'Exists? TrueIs writable?
>>>>>True
>>>>> OMERO temp dir: '/home/jribecarios/omero/tmp'Exists? TrueIs
>>>>> writable? True (Size: 0)
>>>>> OMERO.web status... [RUNNING] (PID 11366)
>>>>>
>>>>>
>>>>> Many thanks in advance!!
>>>>>
>>>>> Best regards,
>>>>> Unai
>>>>>
>>>>> _______________________________________________
>>>>> ome-users mailing list
>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>
>>>>
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