[ome-users] omero.cli error

[Simon Li]

Hi John

Could you try adding --debug DEBUG to your import command, and see if it gives any more information? If that doesn't help could you send us cli.err and cli.out?

Many thanks

Simon

On 25 Mar 2014, at 15:46, "John Webber (NBI)" <John.Webber at nbi.ac.uk<mailto:John.Webber at nbi.ac.uk>>
 wrote:

Hi,

I’m currently experiencing an issue with a bulk upload of images to Omero.  This is being run from the command line.

I am seeing the following errors, and my bulk upload fails:

    cli.invoke(import_args, strict=True)
  File "/opt/OMERO.server-4.4.8p1-ice33-b304/lib/python/omero/cli.py", line 749, in invoke
    self.assertRC()
  File "/opt/OMERO.server-4.4.8p1-ice33-b304/lib/python/omero/cli.py", line 738, in assertRC
    raise NonZeroReturnCode(self.rv, "assert failed")
omero.cli.NonZeroReturnCode: assert failed

The bulk upload failed while writing an image, with the following arguments:

['import', '-s', 'localhost', '-u', 'upload', '-w', '<password removed>', '-p', '4064', '-d', '1687', '-n', '11_03_14_krp4_1130_b1_boundaries.inr.gz', '---errs=cli.err', '---file=cli.out', '--', '/tmp/tmpB3u1Gn/11_03_14_krp4_1130_b1/11_03_14_krp4_1130_b1_boundaries.inr.gz']

When I try to run the upload again, it fails for a different image – it does not fail on the same one upload time!

I am unable to see much additional information:  I have checked in the omero logs, (/opt/Omero/var/log), but am not able to see any additional logging.  I have checked filesystem sizes, and nothing seems to have filled up!

Please can you point me in the right direction as to how I can debug this issue further?

Thanks
John



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John Webber
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