[ome-users] omero.cli error

[John Webber (NBI)]

Hi,

I'm currently experiencing an issue with a bulk upload of images to Omero.  This is being run from the command line.

I am seeing the following errors, and my bulk upload fails:

    cli.invoke(import_args, strict=True)
  File "/opt/OMERO.server-4.4.8p1-ice33-b304/lib/python/omero/cli.py", line 749, in invoke
    self.assertRC()
  File "/opt/OMERO.server-4.4.8p1-ice33-b304/lib/python/omero/cli.py", line 738, in assertRC
    raise NonZeroReturnCode(self.rv, "assert failed")
omero.cli.NonZeroReturnCode: assert failed

The bulk upload failed while writing an image, with the following arguments:

['import', '-s', 'localhost', '-u', 'upload', '-w', '<password removed>', '-p', '4064', '-d', '1687', '-n', '11_03_14_krp4_1130_b1_boundaries.inr.gz', '---errs=cli.err', '---file=cli.out', '--', '/tmp/tmpB3u1Gn/11_03_14_krp4_1130_b1/11_03_14_krp4_1130_b1_boundaries.inr.gz']

When I try to run the upload again, it fails for a different image - it does not fail on the same one upload time!

I am unable to see much additional information:  I have checked in the omero logs, (/opt/Omero/var/log), but am not able to see any additional logging.  I have checked filesystem sizes, and nothing seems to have filled up!

Please can you point me in the right direction as to how I can debug this issue further?

Thanks
John



--------------------------------------------------------------------------------------------------------------------------------------------
John Webber
Computing and Information Services
NBI Partnership Ltd
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