[ome-users] DeltaVision file format support

[Graeme Ball]

Hi,

if you are looking for DeltaVision support from python, Sebastian Haase's
"priithon" project (https://code.google.com/p/priithon/) contains an Mrc
file reader/writer -- take a look at: Priithon/Mrc.py

API have added some extra metadata to the basic format (
http://msg.ucsf.edu/IVE/IVE4_HTML/IM_ref2.html), but hopefully you don't
need that.

Regards,

Graeme


On Mon, Jan 27, 2014 at 7:45 AM, Melissa Linkert <
melissa at glencoesoftware.com> wrote:

> Hi Lee and Carolina,
>
> > > I have a collaborator that would like to load multi-channel 2D
> DeltaVision
> > > files in CellProfiler.
> > > I'm aware of the ImageJ plugin to load DeltaVision files, but it seems
> a
> > > bit complicated to use the CellProfiler-ImageJ bridge to load images?
> > > Do you think it will be possible to load DeltaVision files directly
> into
> > > CellProfiler in the near future?
> >
> > Carolina, I was thinking I might take a shot at writing the image
> reader. I
> > have the code for the ImageJ plugin and it has no copyright. Do you have
> an
> > example file?
>
> Maybe I misunderstand, but doesn't CellProfiler already have a way to
> load images using Bio-Formats directly (without ImageJ)?  In that case,
> Deltavision data should be supported, though if there are any issues on our
> side we'd be happy to address them.
>
> Regards,
> -Melissa
>
> On Mon, Jan 27, 2014 at 08:05:47AM -0500, Lee Kamentsky wrote:
> > Carolina, I was thinking I might take a shot at writing the image
> reader. I
> > have the code for the ImageJ plugin and it has no copyright. Do you have
> an
> > example file?
> >
> > --Lee
> >
> >
> > On Mon, Jan 27, 2014 at 3:33 AM, Carolina Wählby <
> > carolina at broadinstitute.org> wrote:
> >
> > > Hi,
> > > I have a collaborator that would like to load multi-channel 2D
> DeltaVision
> > > files in CellProfiler.
> > > I'm aware of the ImageJ plugin to load DeltaVision files, but it seems
> a
> > > bit complicated to use the CellProfiler-ImageJ bridge to load images?
> > > Do you think it will be possible to load DeltaVision files directly
> into
> > > CellProfiler in the near future?
> > > Best regards
> > > Carolina Wählby
> > >
> > >
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