[ome-users] convert .czi file with bfconvert

[Maier, Lorenz]

Hi,

There seem to be two errors with bfconvert 5.0.3 that occur for a .czi file of X: 128, Y:128, C:2, Z:41.
I've uploaded an example including input and commands at QA 9412.

Command 1: bfconvert -z 1 in.czi out.tif

Error:
Exception in thread "main" loci.formats.FormatException: Plane index:2 must be < 2
        at loci.formats.FormatWriter.checkParams(FormatWriter.java:325)
        at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:170)
        at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:386)
        at loci.formats.FormatWriter.saveBytes(FormatWriter.java:126)
        at loci.formats.ImageWriter.saveBytes(ImageWriter.java:201)
        at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:547)
        at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:483)
        at loci.formats.tools.ImageConverter.main(ImageConverter.java:677)


Command 2:
bfconvert in.czi out_%%z.tif
showinf out_40.tif

Error:
Exception in thread "main" loci.formats.FormatException: loci.common.ReflectException: Cannot execute method: getNumPages


Best regards,
Lorenz

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