[ome-users] problem reading 14bit JPEG2000

[Mario Emmenlauer]

Hi Curtis,

On 10.09.2013 15:58, Curtis Rueden wrote:
>> I get an error that the jai libraries would be missing. I checked my
>> installation of Fiji (fully up-to-date and no local modifications or
>> extras) and it brings jai_imageio-1.0.1.jar. Am I doing something
>> wrong?
> 
> Nope, it was a problem introduced in the Fiji distribution recently.
> 
> Short answer: I believe I have fixed it. Please try updating again and let me
> know if it works now.

Works like a charm! Thanks a lot for the instant fix, its appreciated! :-)

Cheers,

   Mario



> Long answer: Fiji now ships both SCIFIO (http://scif.io/) and Bio-Formats. Each
> library has its own version of jai_imageio. Both are forks of the official
> jai_imageio. Bio-Formats's fork does *not* shade (i.e., rename) the packages;
> SCIFIO's does. Hence, both can be coexist in the same JVM (but not with the
> official version). Until just now, the SCIFIO version (i.e.,
> jai_imageio-1.0.1.jar) was "overwriting" the Bio-Formats one, so both were not
> being shipped. I have remedied it by moving the Bio-Formats version into the
> "jars/bio-formats" subfolder.
> 
> Regards,
> Curtis
> 
> 
> On Tue, Sep 10, 2013 at 4:59 AM, Mario Emmenlauer <mario at emmenlauer.de
> <mailto:mario at emmenlauer.de>> wrote:
> 
> 
>     Dear Bio-Formats Developers,
> 
>     I'm not sure if this is an issue with Bio-Formats or with Fiji,
>     can you please advise me whether to forward to the correct list?
> 
>     The following image fails to open for me, and I get an error that
>     the jai libraries would be missing. I checked my installation of
>     Fiji (fully up-to-date and no local modifications or extras) and it
>     brings jai_imageio-1.0.1.jar. Am I doing something wrong?
> 
>         http://data.marssoft.de/bCB01-1D08B_wA01_s6_z1_t1_cDAPI_u1.jp2
> 
>     Thanks and all the best,
> 
>         Mario
> 
> 
> 
> 
> 
> 
>     --
>     Mario Emmenlauer, Dipl.Inf.                  Office: +41-(0)61-26-72110
>     <tel:%2B41-%280%2961-26-72110>
>     Biozentrum Basel
>     Klingelbergstrasse 50/70           mailto: mario.emmenlauer * unibas.ch
>     <http://unibas.ch>
>     CH-4056 Basel                     http://infectx.org/about_us/emmenlau/
> 
> 
> 
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