[ome-users] ome-users Digest, Vol 104, Issue 1
Josh Moore
josh at glencoesoftware.com
Fri Nov 1 12:10:46 GMT 2013
On Nov 1, 2013, at 1:02 PM, Jake Carroll wrote:
> Made what I think might be further progress?
>
> 2013-11-01 21:56:13,117 INFO [ ome.services.util.ServiceHandler]
> (l.Server-2) Excp: org.springframework.ldap.AuthenticationException:
> [LDAP: error code 32 - No Such Object]; nested exception is
> javax.naming.AuthenticationException: [LDAP: error code 32 - No Such
> Object]
>
> Googling around, looks like it¹s related to binddn name or basedn form?
Do you have an example query with ldapsearch (or similar) with the same basedn and bindn that you used for OMERO?
~J.
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 1 Nov 2013 04:37:03 +0000
>> From: Jake Carroll <jake.carroll at uq.edu.au>
>> To: "ome-users at lists.openmicroscopy.org.uk"
>> <ome-users at lists.openmicroscopy.org.uk>
>> Subject: [ome-users] Omero 5 + LDAP + Ubuntu - more detail
>> Message-ID: <CE996CC5.2DFDA%jake.carroll at uq.edu.au>
>> Content-Type: text/plain; charset="Windows-1252"
>>
>> All,
>>
>> A further bit of data.
>>
>> 2013-11-01 07:51:11,801 INFO [ ome.services.util.ServiceHandler]
>> (l.Server-2) Excp: org.springframework.ldap.InvalidSearchFilterException:
>> Missing 'equals'; nested exception is
>> javax.naming.directory.InvalidSearchFilterException: Missing 'equals';
>> remaining name ''
>>
>>
>>
>> Seeing that now. Any ideas?
>>
>> ?jc
>>
>>
>>
>>
>>> ----------------------------------------------------------------------
>>>
>>> Message: 1
>>> Date: Thu, 31 Oct 2013 20:15:30 +0000
>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>> To: "ome-users at lists.openmicroscopy.org.uk"
>>> <ome-users at lists.openmicroscopy.org.uk>
>>> Subject: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <CE98F778.2DF12%jake.carroll at uq.edu.au>
>>> Content-Type: text/plain; charset="windows-1252"
>>>
>>> Hi all,
>>>
>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero 5
>>> host.
>>>
>>> The host itself and Omero service came together very nicely and
>>> everything is working well. Just following this guide:
>>>
>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.h
>>> t
>>> ml
>>>
>>> And wondering if there are any gotchas or issues associated with LDAP
>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>> involved etc.
>>>
>>> Also, are there any logs/auth-logs or otherwise which I should look to,
>>> to troubleshoot my bind?
>>>
>>> Thank you, all!
>>>
>>> ?jc
>>>
>>>
>>> -------------- next part --------------
>>> An HTML attachment was scrubbed...
>>> URL:
>>> <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20131
>>> 0
>>> 31/7f2b85cb/attachment-0001.html>
>>>
>>> ------------------------------
>>>
>>> Message: 2
>>> Date: Thu, 31 Oct 2013 21:28:38 +0100
>>> From: Josh Moore <josh at glencoesoftware.com>
>>> To: Jake Carroll <jake.carroll at uq.edu.au>
>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>> <ome-users at lists.openmicroscopy.org.uk>
>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <2271AB2B-DC26-4BD1-8AEB-27DE4BC8A230 at glencoesoftware.com>
>>> Content-Type: text/plain; charset=windows-1252
>>>
>>>
>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>
>>>> Hi all,
>>>
>>> Hi Jake,
>>>
>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>> 5 host.
>>>>
>>>> The host itself and Omero service came together very nicely and
>>>> everything is working well. Just following this guide:
>>>>
>>>>
>>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.
>>>> h
>>>> tml
>>>>
>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>> involved etc.
>>>
>>> There shouldn't be anything Ubuntu-specific to be aware of since all the
>>> LDAP communication is Java-based and platform independent.
>>>
>>>> Also, are there any logs/auth-logs or otherwise which I should look to,
>>>> to troubleshoot my bind?
>>>
>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>> having any troubles, do send that along.
>>>
>>>> Thank you, all!
>>>> ?jc
>>>
>>> Cheers,
>>> ~Josh
>>>
>>> ------------------------------
>>>
>>> Message: 3
>>> Date: Thu, 31 Oct 2013 20:35:14 +0000
>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>> To: Josh Moore <josh at glencoesoftware.com>
>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>> <ome-users at lists.openmicroscopy.org.uk>
>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <CE98FBA4.2DF18%jake.carroll at uq.edu.au>
>>> Content-Type: text/plain; charset="Windows-1252"
>>>
>>> Great!
>>>
>>> Thanks Josh. See below.
>>>
>>> On 1/11/2013 6:28, "Josh Moore" <josh at glencoesoftware.com> wrote:
>>>
>>>>
>>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>>
>>>>> Hi all,
>>>>
>>>> Hi Jake,
>>>>
>>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>>> 5 host.
>>>>>
>>>>> The host itself and Omero service came together very nicely and
>>>>> everything is working well. Just following this guide:
>>>>>
>>>>>
>>>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap
>>>>> .
>>>>> h
>>>>> tml
>>>>>
>>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>>> involved etc.
>>>>
>>>> There shouldn't be anything Ubuntu-specific to be aware of since all the
>>>> LDAP communication is Java-based and platform independent.
>>>
>>> OK. That?s really nice. All self contained! Cool, and to that end, do I
>>> *need* a secure keystore if I do LDAP-secure (SSL to the ldap server)
>>> such
>>> that I?d need to put a keystore somewhere on the host? Any best practice
>>> on where said keystore should be?
>>>
>>>>
>>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>> to,
>>>>> to troubleshoot my bind?
>>>>
>>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>>> having any troubles, do send that along.
>>>
>>> I?ll look around now?
>>>
>>>>
>>>>> Thank you, all!
>>>>> ?jc
>>>>
>>>> Cheers,
>>>> ~Josh
>>>
>>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Fri, 1 Nov 2013 08:11:37 +0100
>> From: Josh Moore <josh at glencoesoftware.com>
>> To: Jake Carroll <jake.carroll at uq.edu.au>
>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>> <ome-users at lists.openmicroscopy.org.uk>
>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu - more detail
>> Message-ID: <02A291A6-B872-47CF-A19D-58092E69D29E at glencoesoftware.com>
>> Content-Type: text/plain; charset=windows-1252
>>
>>
>> On Nov 1, 2013, at 5:37 AM, Jake Carroll wrote:
>>
>>> All,
>>>
>>> A further bit of data.
>>>
>>> 2013-11-01 07:51:11,801 INFO [ ome.services.util.ServiceHandler]
>>> (l.Server-2)
>>> Excp: org.springframework.ldap.InvalidSearchFilterException:
>>> Missing 'equals'; nested exception is
>>> javax.naming.directory.InvalidSearchFilterException: Missing 'equals';
>>> remaining name ''
>>>
>>> Seeing that now. Any ideas?
>>
>> Base on the config sent off list, e.g.
>>
>> omero.ldap.username='uid=abc,...c=au'
>>
>> omit the quotes. The instructions list them for use on the command-line,
>> but they aren't part of the actual LDAP strings. What counts is what is
>> printed by:
>>
>> bin/omero config get
>>
>> That should _not_ show any quotes for base or username.
>>
>> Cheers,
>> ~Josh.
>>
>>
>>> ?jc
>>>
>>>
>>>
>>>
>>>> ----------------------------------------------------------------------
>>>>
>>>> Message: 1
>>>> Date: Thu, 31 Oct 2013 20:15:30 +0000
>>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>>> To: "ome-users at lists.openmicroscopy.org.uk"
>>>> <ome-users at lists.openmicroscopy.org.uk>
>>>> Subject: [ome-users] Omero 5 + LDAP + Ubuntu
>>>> Message-ID: <CE98F778.2DF12%jake.carroll at uq.edu.au>
>>>> Content-Type: text/plain; charset="windows-1252"
>>>>
>>>> Hi all,
>>>>
>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>> 5
>>>> host.
>>>>
>>>> The host itself and Omero service came together very nicely and
>>>> everything is working well. Just following this guide:
>>>>
>>>>
>>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.
>>>> ht
>>>> ml
>>>>
>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>> involved etc.
>>>>
>>>> Also, are there any logs/auth-logs or otherwise which I should look to,
>>>> to troubleshoot my bind?
>>>>
>>>> Thank you, all!
>>>>
>>>> ?jc
>>>>
>>>>
>>>> -------------- next part --------------
>>>> An HTML attachment was scrubbed...
>>>> URL:
>>>>
>>>> <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/2013
>>>> 10
>>>> 31/7f2b85cb/attachment-0001.html>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 2
>>>> Date: Thu, 31 Oct 2013 21:28:38 +0100
>>>> From: Josh Moore <josh at glencoesoftware.com>
>>>> To: Jake Carroll <jake.carroll at uq.edu.au>
>>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>>> <ome-users at lists.openmicroscopy.org.uk>
>>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>>> Message-ID: <2271AB2B-DC26-4BD1-8AEB-27DE4BC8A230 at glencoesoftware.com>
>>>> Content-Type: text/plain; charset=windows-1252
>>>>
>>>>
>>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>>
>>>>> Hi all,
>>>>
>>>> Hi Jake,
>>>>
>>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>>> 5 host.
>>>>>
>>>>> The host itself and Omero service came together very nicely and
>>>>> everything is working well. Just following this guide:
>>>>>
>>>>>
>>>>>
>>>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap
>>>>> .h
>>>>> tml
>>>>>
>>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>>> involved etc.
>>>>
>>>> There shouldn't be anything Ubuntu-specific to be aware of since all
>>>> the
>>>> LDAP communication is Java-based and platform independent.
>>>>
>>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>> to,
>>>>> to troubleshoot my bind?
>>>>
>>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>>> having any troubles, do send that along.
>>>>
>>>>> Thank you, all!
>>>>> ?jc
>>>>
>>>> Cheers,
>>>> ~Josh
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 3
>>>> Date: Thu, 31 Oct 2013 20:35:14 +0000
>>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>>> To: Josh Moore <josh at glencoesoftware.com>
>>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>>> <ome-users at lists.openmicroscopy.org.uk>
>>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>>> Message-ID: <CE98FBA4.2DF18%jake.carroll at uq.edu.au>
>>>> Content-Type: text/plain; charset="Windows-1252"
>>>>
>>>> Great!
>>>>
>>>> Thanks Josh. See below.
>>>>
>>>> On 1/11/2013 6:28, "Josh Moore" <josh at glencoesoftware.com> wrote:
>>>>
>>>>>
>>>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>>>
>>>>>> Hi all,
>>>>>
>>>>> Hi Jake,
>>>>>
>>>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu
>>>>>> Omero
>>>>>> 5 host.
>>>>>>
>>>>>> The host itself and Omero service came together very nicely and
>>>>>> everything is working well. Just following this guide:
>>>>>>
>>>>>>
>>>>>>
>>>>>> http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-lda
>>>>>> p.
>>>>>> h
>>>>>> tml
>>>>>>
>>>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>>>> involved etc.
>>>>>
>>>>> There shouldn't be anything Ubuntu-specific to be aware of since all
>>>>> the
>>>>> LDAP communication is Java-based and platform independent.
>>>>
>>>> OK. That?s really nice. All self contained! Cool, and to that end, do I
>>>> *need* a secure keystore if I do LDAP-secure (SSL to the ldap server)
>>>> such
>>>> that I?d need to put a keystore somewhere on the host? Any best
>>>> practice
>>>> on where said keystore should be?
>>>>
>>>>>
>>>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>>> to,
>>>>>> to troubleshoot my bind?
>>>>>
>>>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>>>> having any troubles, do send that along.
>>>>
>>>> I?ll look around now?
>>>>
>>>>>
>>>>>> Thank you, all!
>>>>>> ?jc
>>>>>
>>>>> Cheers,
>>>>> ~Josh
>>>>
>>
>>
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Fri, 1 Nov 2013 11:48:41 +0100
>> From: Josh Moore <josh at glencoesoftware.com>
>> To: Douglas Russell <douglas.russell at bioch.ox.ac.uk>
>> Cc: ome-users at lists.openmicroscopy.org.uk
>> Subject: Re: [ome-users] Frequent Omero Server OOM
>> Message-ID: <6E4A6E69-25F1-457E-BD70-B13319A594EB at glencoesoftware.com>
>> Content-Type: text/plain; charset=us-ascii
>>
>>
>> On Oct 31, 2013, at 7:15 PM, Douglas Russell wrote:
>>> I'm currently having to restart OMERO every few days at minimum (I
>>> assume
>>> depending on usage) because of these errors. Normally there is nothing
>>> which looks relevant in the Blitz log. The master.err contains messages
>>> like the attached file.
>>>
>>> Some relevant settings:
>>> <property name="Ice.MessageSizeMax" value="131072"/>
>>> <option>-Xmx2048M</option>
>>> <option>-XX:MaxPermSize=1024M</option>
>>
>> Other than simply needing more memory than 2GB, the only possible cause
>> of the exceptions I can think of is a mismatch in your slice definitions.
>> See:
>>
>> http://www.zeroc.com/forums/bug-reports/4782-3-3-1-outofmemory-client-when
>> -slice-definition-modified.html
>>
>> But if you are using a release version (e.g 4.4.9), then we can eliminate
>> that as a cause.
>>
>> If it's happening periodically, it would be good to know if it's always
>> happening after a particular method call, or after use particular user
>> action.
>>
>> Finally, a heap dump (or several on different occasions) might also point
>> to the problem.
>>
>> Cheers,
>> ~Josh
>>
>> ------------------------------
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>>
>> End of ome-users Digest, Vol 104, Issue 1
>> *****************************************
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