[ome-users] ome-users Digest, Vol 104, Issue 1

Fri Nov 1 12:02:58 GMT 2013

Made what I think might be further progress?

2013-11-01 21:56:13,117 INFO  [        ome.services.util.ServiceHandler]
(l.Server-2)  Excp:	org.springframework.ldap.AuthenticationException:
[LDAP: error code 32 - No Such Object]; nested exception is
javax.naming.AuthenticationException: [LDAP: error code 32 - No Such
Object]

Googling around, looks like it¹s related to binddn name or basedn form?

-jc

>----------------------------------------------------------------------
>
>Message: 1
>Date: Fri, 1 Nov 2013 04:37:03 +0000
>From: Jake Carroll <jake.carroll at uq.edu.au>
>To: "ome-users at lists.openmicroscopy.org.uk"
>	<ome-users at lists.openmicroscopy.org.uk>
>Subject: [ome-users] Omero 5 + LDAP + Ubuntu - more detail
>Message-ID: <CE996CC5.2DFDA%jake.carroll at uq.edu.au>
>Content-Type: text/plain; charset="Windows-1252"
>
>All,
>
>A further bit of data.
>
>2013-11-01 07:51:11,801 INFO  [        ome.services.util.ServiceHandler]
>(l.Server-2)  Excp:	org.springframework.ldap.InvalidSearchFilterException:
>Missing 'equals'; nested exception is
>javax.naming.directory.InvalidSearchFilterException: Missing 'equals';
>remaining name ''
>
>
>
>Seeing that now. Any ideas?
>
>?jc
>
>
>
>
>>----------------------------------------------------------------------
>>
>>Message: 1
>>Date: Thu, 31 Oct 2013 20:15:30 +0000
>>From: Jake Carroll <jake.carroll at uq.edu.au>
>>To: "ome-users at lists.openmicroscopy.org.uk"
>>	<ome-users at lists.openmicroscopy.org.uk>
>>Subject: [ome-users] Omero 5 + LDAP + Ubuntu
>>Message-ID: <CE98F778.2DF12%jake.carroll at uq.edu.au>
>>Content-Type: text/plain; charset="windows-1252"
>>
>>Hi all,
>>
>>In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero 5
>>host.
>>
>>The host itself and Omero service came together very nicely and
>>everything is working well. Just following this guide:
>>
>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.h
>>t
>>ml
>>
>>And wondering if there are any gotchas or issues associated with LDAP
>>binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>involved etc.
>>
>>Also, are there any logs/auth-logs or otherwise which I should look to,
>>to troubleshoot my bind?
>>
>>Thank you, all!
>>
>>?jc
>>
>>
>>-------------- next part --------------
>>An HTML attachment was scrubbed...
>>URL: 
>><http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20131
>>0
>>31/7f2b85cb/attachment-0001.html>
>>
>>------------------------------
>>
>>Message: 2
>>Date: Thu, 31 Oct 2013 21:28:38 +0100
>>From: Josh Moore <josh at glencoesoftware.com>
>>To: Jake Carroll <jake.carroll at uq.edu.au>
>>Cc: "ome-users at lists.openmicroscopy.org.uk"
>>	<ome-users at lists.openmicroscopy.org.uk>
>>Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>Message-ID: <2271AB2B-DC26-4BD1-8AEB-27DE4BC8A230 at glencoesoftware.com>
>>Content-Type: text/plain; charset=windows-1252
>>
>>
>>On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>
>>> Hi all,
>>
>>Hi Jake,
>>
>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>5 host.
>>> 
>>> The host itself and Omero service came together very nicely and
>>>everything is working well. Just following this guide:
>>> 
>>> 
>>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.
>>>h
>>>tml
>>> 
>>> And wondering if there are any gotchas or issues associated with LDAP
>>>binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>involved etc.
>>
>>There shouldn't be anything Ubuntu-specific to be aware of since all the
>>LDAP communication is Java-based and platform independent.
>>
>>> Also, are there any logs/auth-logs or otherwise which I should look to,
>>>to troubleshoot my bind?
>>
>>Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>having any troubles, do send that along.
>>
>>> Thank you, all!
>>> ?jc
>>
>>Cheers,
>>~Josh
>>
>>------------------------------
>>
>>Message: 3
>>Date: Thu, 31 Oct 2013 20:35:14 +0000
>>From: Jake Carroll <jake.carroll at uq.edu.au>
>>To: Josh Moore <josh at glencoesoftware.com>
>>Cc: "ome-users at lists.openmicroscopy.org.uk"
>>	<ome-users at lists.openmicroscopy.org.uk>
>>Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>Message-ID: <CE98FBA4.2DF18%jake.carroll at uq.edu.au>
>>Content-Type: text/plain; charset="Windows-1252"
>>
>>Great!
>>
>>Thanks Josh. See below.
>>
>>On 1/11/2013 6:28, "Josh Moore" <josh at glencoesoftware.com> wrote:
>>
>>>
>>>On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>
>>>> Hi all,
>>>
>>>Hi Jake,
>>>
>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>>5 host.
>>>> 
>>>> The host itself and Omero service came together very nicely and
>>>>everything is working well. Just following this guide:
>>>> 
>>>> 
>>>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap
>>>>.
>>>>h
>>>>tml
>>>> 
>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>>binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>>involved etc.
>>>
>>>There shouldn't be anything Ubuntu-specific to be aware of since all the
>>>LDAP communication is Java-based and platform independent.
>>
>>OK. That?s really nice. All self contained! Cool, and to that end, do I
>>*need* a secure keystore if I do LDAP-secure (SSL to the ldap server)
>>such
>>that I?d need to put a keystore somewhere on the host? Any best practice
>>on where said keystore should be?
>>
>>>
>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>to,
>>>>to troubleshoot my bind?
>>>
>>>Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>>having any troubles, do send that along.
>>
>>I?ll look around now?
>>
>>>
>>>> Thank you, all!
>>>> ?jc
>>>
>>>Cheers,
>>>~Josh
>>
>
>
>
>------------------------------
>
>Message: 2
>Date: Fri, 1 Nov 2013 08:11:37 +0100
>From: Josh Moore <josh at glencoesoftware.com>
>To: Jake Carroll <jake.carroll at uq.edu.au>
>Cc: "ome-users at lists.openmicroscopy.org.uk"
>	<ome-users at lists.openmicroscopy.org.uk>
>Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu - more detail
>Message-ID: <02A291A6-B872-47CF-A19D-58092E69D29E at glencoesoftware.com>
>Content-Type: text/plain; charset=windows-1252
>
>
>On Nov 1, 2013, at 5:37 AM, Jake Carroll wrote:
>
>> All,
>> 
>> A further bit of data.
>> 
>> 2013-11-01 07:51:11,801 INFO  [        ome.services.util.ServiceHandler]
>> (l.Server-2)  
>>Excp:	org.springframework.ldap.InvalidSearchFilterException:
>> Missing 'equals'; nested exception is
>> javax.naming.directory.InvalidSearchFilterException: Missing 'equals';
>> remaining name ''
>> 
>> Seeing that now. Any ideas?
>
>Base on the config sent off list, e.g.
>
>  omero.ldap.username='uid=abc,...c=au'
>
>omit the quotes. The instructions list them for use on the command-line,
>but they aren't part of the actual LDAP strings. What counts is what is
>printed by:
>
> bin/omero config get
>
>That should _not_ show any quotes for base or username.
>
>Cheers,
>~Josh.
>
>
>> ?jc
>> 
>> 
>> 
>> 
>>> ----------------------------------------------------------------------
>>> 
>>> Message: 1
>>> Date: Thu, 31 Oct 2013 20:15:30 +0000
>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>> To: "ome-users at lists.openmicroscopy.org.uk"
>>> 	<ome-users at lists.openmicroscopy.org.uk>
>>> Subject: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <CE98F778.2DF12%jake.carroll at uq.edu.au>
>>> Content-Type: text/plain; charset="windows-1252"
>>> 
>>> Hi all,
>>> 
>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>5
>>> host.
>>> 
>>> The host itself and Omero service came together very nicely and
>>> everything is working well. Just following this guide:
>>> 
>>> 
>>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap.
>>>ht
>>> ml
>>> 
>>> And wondering if there are any gotchas or issues associated with LDAP
>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>> involved etc.
>>> 
>>> Also, are there any logs/auth-logs or otherwise which I should look to,
>>> to troubleshoot my bind?
>>> 
>>> Thank you, all!
>>> 
>>> ?jc
>>> 
>>> 
>>> -------------- next part --------------
>>> An HTML attachment was scrubbed...
>>> URL: 
>>> 
>>><http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/2013
>>>10
>>> 31/7f2b85cb/attachment-0001.html>
>>> 
>>> ------------------------------
>>> 
>>> Message: 2
>>> Date: Thu, 31 Oct 2013 21:28:38 +0100
>>> From: Josh Moore <josh at glencoesoftware.com>
>>> To: Jake Carroll <jake.carroll at uq.edu.au>
>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>> 	<ome-users at lists.openmicroscopy.org.uk>
>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <2271AB2B-DC26-4BD1-8AEB-27DE4BC8A230 at glencoesoftware.com>
>>> Content-Type: text/plain; charset=windows-1252
>>> 
>>> 
>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>> 
>>>> Hi all,
>>> 
>>> Hi Jake,
>>> 
>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu Omero
>>>> 5 host.
>>>> 
>>>> The host itself and Omero service came together very nicely and
>>>> everything is working well. Just following this guide:
>>>> 
>>>> 
>>>> 
>>>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-ldap
>>>>.h
>>>> tml
>>>> 
>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>> involved etc.
>>> 
>>> There shouldn't be anything Ubuntu-specific to be aware of since all
>>>the
>>> LDAP communication is Java-based and platform independent.
>>> 
>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>to,
>>>> to troubleshoot my bind?
>>> 
>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>> having any troubles, do send that along.
>>> 
>>>> Thank you, all!
>>>> ?jc
>>> 
>>> Cheers,
>>> ~Josh
>>> 
>>> ------------------------------
>>> 
>>> Message: 3
>>> Date: Thu, 31 Oct 2013 20:35:14 +0000
>>> From: Jake Carroll <jake.carroll at uq.edu.au>
>>> To: Josh Moore <josh at glencoesoftware.com>
>>> Cc: "ome-users at lists.openmicroscopy.org.uk"
>>> 	<ome-users at lists.openmicroscopy.org.uk>
>>> Subject: Re: [ome-users] Omero 5 + LDAP + Ubuntu
>>> Message-ID: <CE98FBA4.2DF18%jake.carroll at uq.edu.au>
>>> Content-Type: text/plain; charset="Windows-1252"
>>> 
>>> Great!
>>> 
>>> Thanks Josh. See below.
>>> 
>>> On 1/11/2013 6:28, "Josh Moore" <josh at glencoesoftware.com> wrote:
>>> 
>>>> 
>>>> On Oct 31, 2013, at 9:15 PM, Jake Carroll wrote:
>>>> 
>>>>> Hi all,
>>>> 
>>>> Hi Jake,
>>>> 
>>>>> In the throws of making some LDAP auth work with my 13.10 Ubuntu
>>>>>Omero
>>>>> 5 host.
>>>>> 
>>>>> The host itself and Omero service came together very nicely and
>>>>> everything is working well. Just following this guide:
>>>>> 
>>>>> 
>>>>> 
>>>>>http://www.openmicroscopy.org/site/support/omero5/sysadmins/server-lda
>>>>>p.
>>>>> h
>>>>> tml
>>>>> 
>>>>> And wondering if there are any gotchas or issues associated with LDAP
>>>>> binding using Ubuntu 13.10/any dependencies you?d expect need to be
>>>>> involved etc.
>>>> 
>>>> There shouldn't be anything Ubuntu-specific to be aware of since all
>>>>the
>>>> LDAP communication is Java-based and platform independent.
>>> 
>>> OK. That?s really nice. All self contained! Cool, and to that end, do I
>>> *need* a secure keystore if I do LDAP-secure (SSL to the ldap server)
>>>such
>>> that I?d need to put a keystore somewhere on the host? Any best
>>>practice
>>> on where said keystore should be?
>>> 
>>>> 
>>>>> Also, are there any logs/auth-logs or otherwise which I should look
>>>>>to,
>>>>> to troubleshoot my bind?
>>>> 
>>>> Any messages related to LDAP will be in var/log/Blitz-0.log. If you're
>>>> having any troubles, do send that along.
>>> 
>>> I?ll look around now?
>>> 
>>>> 
>>>>> Thank you, all!
>>>>> ?jc
>>>> 
>>>> Cheers,
>>>> ~Josh
>>> 
>
>
>
>------------------------------
>
>Message: 3
>Date: Fri, 1 Nov 2013 11:48:41 +0100
>From: Josh Moore <josh at glencoesoftware.com>
>To: Douglas Russell <douglas.russell at bioch.ox.ac.uk>
>Cc: ome-users at lists.openmicroscopy.org.uk
>Subject: Re: [ome-users] Frequent Omero Server OOM
>Message-ID: <6E4A6E69-25F1-457E-BD70-B13319A594EB at glencoesoftware.com>
>Content-Type: text/plain; charset=us-ascii
>
>
>On Oct 31, 2013, at 7:15 PM, Douglas Russell wrote:
>> I'm currently having to restart OMERO every few days at minimum (I
>>assume
>> depending on usage) because of these errors. Normally there is nothing
>> which looks relevant in the Blitz log. The master.err contains messages
>> like the attached file.
>> 
>> Some relevant settings:
>> <property name="Ice.MessageSizeMax" value="131072"/>
>> <option>-Xmx2048M</option>
>> <option>-XX:MaxPermSize=1024M</option>
>
>Other than simply needing more memory than 2GB, the only possible cause
>of the exceptions I can think of is a mismatch in your slice definitions.
>See:
>
>http://www.zeroc.com/forums/bug-reports/4782-3-3-1-outofmemory-client-when
>-slice-definition-modified.html
>
>But if you are using a release version (e.g 4.4.9), then we can eliminate
>that as a cause.
>
>If it's happening periodically, it would be good to know if it's always
>happening after a particular method call, or after use particular user
>action.
>
>Finally, a heap dump (or several on different occasions) might also point
>to the problem.
>
>Cheers,
>~Josh
>
>------------------------------
>
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>ome-users mailing list
>ome-users at lists.openmicroscopy.org.uk
>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
>End of ome-users Digest, Vol 104, Issue 1
>*****************************************