[ome-users] .czi bug report

[Julien Cau]

Hi there,

I first would like to thank all the community for the incredible done 
job! We really do appreciate not to bother anymore with proprietary file 
formats!

However, I would like to point what I believe is a bug for Carl Zeiss 
.czi files. Most of them open properly, however, when doing linescan 
imaging versus time, upon opening of the image I can't find all the 
information.

Basically, what I do expect is a line image hyperstack with a my 10000 
timepoints as a slider. There is probably some issue under this bug, as 
if one opens the image with Carl Zeiss Zen black, it opens as a XT image 
(ie. an array of n pixels of the line x 10000 lines), while Zen blue 
opens it as one would expect (a single line with timepoints in a slider).

I am using Bio-format 4.4.4 version, same is true with the daily build. 
I am having update 17 of java 7. I am using windows seven.

I get no error message, however, I get a single line with no timepoints 
whatsoever (neither in a XT image nor in a time hyperstack line image) 
see clipboard image. I attached the metadata file as well. If I take 
this image and save it as an .lsm from the Zen software, it is opened as 
a XT array with the correct metadata time interval+timestamp.

I can put the orginal 10Mb image on a FTP site if needed, the image when 
saved as lsm, the metadata, or a zen blue snapshot.

I thank you for the support
Best regards
Julien

____________________________________________
*Julien Cau, PhD. *
Montpellier RIO Imaging Facility /plate-forme d'imagerie Montpellier RIO 
Imaging
Montpellier BIOCAMPUS, UMS3426
Arnaud de Villeneuve Campus
Institut de Génétique Humaine-CNRS
141, rue de la Cardonille F-34396 Montpellier (France)
e-mail: Julien.Cau at igh.cnrs.fr
phone: +33.4.34.35.99.90
mobile: +33.6.50.19.27.49
fax: +33.4.34.35.99.01
URL: http://www.mri.cnrs.fr/
____________________________________________
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