[ome-users] [Software Feedback] LOCI error message

[Curtis Rueden]

Hi Ye,

> I got the following error message from LOCI while loading several
> NIKON .nd2 files. This happened with many files and
> trunk/lateast/stable version of LOCI, so that I hope you could help me
> sorting out the reason. My ImageJ (64-bit) is running on win-7 64-bit
> system.

Thank you for the bug report. This issue may already have a fix in the
works; I am not sure. I am CCing the ome-users list in this reply, to bring
the rest of the OME team into the discussion.

> Could you please provide me a FTP address to upload the nd2 file,
> since the smallest one is ~600M?

I will send you FTP server credentials in a separate mail.

Regards,
Curtis


On Sun, Mar 17, 2013 at 12:25 AM, <yechen at swin.edu.au> wrote:

> Ye Chen sent a message using the contact form at
> http://loci.wisc.edu/contact.
>
> Hi,
>
> I got the following error message from LOCI while loading several NIKON
> .nd2 files. This happened with many files and trunk/lateast/stable version
> of LOCI, so that I hope you could help me sorting out the reason. My ImageJ
> (64-bit) is running on win-7 64-bit system. Could you please provide me a
> FTP address to upload the nd2 file, since the smallest one is ~600M?
>
> Best regards,
>
> Ye
>
> Ye Chen, Ph.D. H34
> Centre for Micro-Photonics
> Faculty of Engineering and Industrial Sciences
> Swinburne University of Technology
> 1 Alfred St. Hawthorn
> Victoria 3122, Australia
> (CRICOS Provider 00111D)
> Ph +61-3-9214-5649
>
>
>         java.lang.**StringIndexOutOfBoundsExceptio**n: String index out
> of range: -9
>
>         at java.lang.String.substring(**String.java:1937)
>
>         at loci.formats.in.**NativeND2Reader.initFile(**
> NativeND2Reader.java:490)
>
>         at loci.formats.FormatReader.**setId(FormatReader.java:1178)
>
>         at loci.formats.DelegateReader.**setId(DelegateReader.java:259)
>
>         at loci.plugins.in.ImportProcess.**initializeFile(ImportProcess.**
> java:482)
>
>         at loci.plugins.in.ImportProcess.**execute(ImportProcess.java:**
> 146)
>
>         at loci.plugins.in.Importer.**showDialogs(Importer.java:141)
>
>         at loci.plugins.in.Importer.run(**Importer.java:79)
>
>         at loci.plugins.LociImporter.run(**LociImporter.java:81)
>
>         at ij.IJ.runUserPlugIn(IJ.java:**183)
>
>         at ij.IJ.runPlugIn(IJ.java:150)
>
>         at ij.Executer.runCommand(**Executer.java:127)
>
>         at ij.Executer.run(Executer.java:**64)
>
>         at ij.IJ.run(IJ.java:249)
>
>         at ij.IJ.run(IJ.java:227)
>
>         at ij.macro.Functions.doRun(**Functions.java:581)
>
>         at ij.macro.Functions.doFunction(**Functions.java:82)
>
>         at ij.macro.Interpreter.**doStatement(Interpreter.java:**203)
>
>         at ij.macro.Interpreter.doBlock(**Interpreter.java:526)
>
>         at ij.macro.Interpreter.runMacro(**Interpreter.java:130)
>
>         at ij.macro.MacroRunner.run(**MacroRunner.java:143)
>
>         at java.lang.Thread.run(Thread.**java:619)
>
>
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