[ome-users] Inputting Tiff Channels

[Curtis Rueden]

Hi David,

> I tried sending a description and example as per your suggestion.
> Doj't know if they got it.

Thanks. I did not see a message from you on the ome-users list though, so I
am cross-posting this reply there to inform the OME team.

Regards,
Curtis


On Fri, Mar 15, 2013 at 8:11 PM, David Webster <dwwebster00 at gmail.com>wrote:

> Curtis,
>
> I tried sending a description and example as per your suggestion. Doj't
> know if they got it.
>
> On Fri, Mar 15, 2013 at 1:30 PM, Curtis Rueden <ctrueden at wisc.edu> wrote:
> > Hi David,
> >
> > > That seems to work although I don't seem to be getting all of the
> > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> >
> > If you think this is a bug, could you please report it on the ome-users
> > list [1] and submit a sample non-working dataset using the OME upload
> > mechanism [2]?
> >
> > Thanks,
> > Curtis
> >
> > [1] http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/
> > [2] http://qa.openmicroscopy.org.uk/
> >
> > On Thu, Mar 14, 2013 at 10:39 PM, David Webster <dwwebster00 at gmail.com
> > wrote:
> > > Thanks. That seems to work although I don't seem to be getting all of
> the
> > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> > >
> > > David Webster
> > >
> > > On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <ctrueden at wisc.edu
> > wrote:
> > > > Hi David,
> > > >
> > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > > > > straight is to confusing.
> > > >
> > > > You can install Bio-Formats into vanilla ImageJ by following
> the directions
> > > > at:
> > > >
> > > >
> https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
> > > >
> > > > But personally I think it is much easier to just use Fiji.
> > > >
> > > > Regards,
> > > > Curtis
> > > >
> > > > On Thu, Mar 14, 2013 at 4:03 PM, David Webster <
> dwwebster00 at gmail.com wrote:
> > > > > Curtis,
> > > > >
> > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and
> Fiji straight
> > > > > is to confusing.
> > > > >
> > > > > Thanks - Daivd Webster
> > > > >
> > > > > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <ctrueden at wisc.edu
> > wrote:
> > > > > > Hi David,
> > > > > >
> > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> ImageJ
> > > > > > > 1.47m. It has 1 layer and 7 channels. I want to get the
> channels.
> > > > > >
> > > > > > Did you try the File > Import > Bio-Formats command? It
> is available with
> > > > > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > > > > >
> > > > > > Regards,
> > > > > > Curtis
> > > > > >
> > > > > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> dwwebster00 at gmail.com> wrote:
> > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> ImageJ 1.47m.
> > > > > > > It has 1 layer and 7 channels.
> > > > > > > I want to get the channels. If I use ImageJ/Open I get
> this error:
> > > > > > >
> > > > > > > Unsupported SamplesPerPixel: 6
> > > > > > >
> > > > > > > I tried installing the Jimi Reader but it get this error.
> > > > > > >
> > > > > > > java.lang.IllegalStateException: Error loading Image
> > > > > > >
> > > > > > > What am I doing wrong, or can I even input multiple channels?
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20130318/00690bd0/attachment.html>