[ome-users] Loci bug opening Aperio svs file

[Melissa Linkert]

Hi Serena,

> > Hi all, i work with fluorescence whole slide images obtained with an
> > Aperio Scanner. I tried to open those svs files in imageJ and Fiji
> > with LOCI plugin but it doesn't work. Some one can suggest me how to
> > solve this problem ?

Note that if you are seeing an error message similar to
"OutOfMemoryError" or "NegativeArraySizeException", then you will almost
certainly need to open a smaller section of the image(s) by using the
"Crop on import" option in the "Bio-Formats Import Options" window.  SVS
files typically contain very large images which cannot be displayed all
at once.

If you are able to open sections of the image using "Crop on import",
then there is no need to send the file.  If you see a different error
message and/or "Crop on import" does not solve the problem, then please
send one of your files as indicated by Curtis, along with the error
message that you are seeing.

Regards,
-Melissa

On Thu, Jun 20, 2013 at 11:35:15AM -0500, Curtis Rueden wrote:
> Hi Serena,
> 
> Thanks for the bug report.
> 
> [CCing the ome-users list, which is the best place to discuss Bio-Formats
> issues.]
> 
> > Hi all, i work with fluorescence whole slide images obtained with an
> > Aperio Scanner. I tried to open those svs files in imageJ and Fiji
> > with LOCI plugin but it doesn't work. Some one can suggest me how to
> > solve this problem ?
> 
> Could you please upload a sample non-working SVS file? It would help us
> diagnose and fix the problem.
> 
> If file is 500 MB or less, you can use:
> http://qa.openmicroscopy.org.uk/qa/upload/
> 
> Or if larger, let us know and we will send you FTP server credentials
> off-list.
> 
> Thanks,
> Curtis
> 
> 
> On Thu, Jun 20, 2013 at 4:58 AM, Serena Buscone <serena.buscone at gmail.com>wrote:
> 
> > Hi all, i work with fluorescence whole slide images obtained with an
> > Aperio Scanner. I tried to open those svs files in imageJ and Fiji with
> > LOCI plugin but it doesn't work. Some one can suggest me how to solve this
> > problem ?
> > Thank you very much
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >

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