[ome-users] Mirror before stitching?

[Sam Lord]

Importing stacks from Micro-Manager works well using Bio-Formats Importer, and the stacks option seems to read location directly from metadata. The only issue I have is that my camera must be rotated 180 degrees, because the columns stitch together well, but each row is upside-down. 


​I tried importing the stack, flipping, exporting, then reimorting, but something must have gotten lost in the metadata in that maneuver. 



​Any chance there is a simple way to tell the stitching that the images are flipped? 


-Sam
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