[ome-users] Bug in 4.4.9 and trunk : channels in ZVI fail to import correctly, first channel duplicated, last channel dropped.

[Melissa Linkert]

Hi Yashka,

> Using Fiji with LOCI 4.4.9 or a new install of LOCI trunk in ImageJ, The
> first channel of a 3-channel ZVI doesn't import.
>
> The imported image has 3 channels, and channel 1 is correct. However,
> apparent channel 2 is a duplicate of the real channel 1, apparent channel 3
> is the actual channel 2, and the expected channel 3 does not load. Loci
> version 4.4.0 works correctly installed into a clean ImageJ. Haven't tried
> intermediate versions.

Yes, that is a known problem.  We are currently reviewing a fix:

https://github.com/openmicroscopy/bioformats/pull/544

The next stable version of Bio-Formats will solve the problem.

Regards,
-Melissa

On Mon, Jun 10, 2013 at 10:51:27PM -0500, Yashka Oreza wrote:
> Using Fiji with LOCI 4.4.9 or a new install of LOCI trunk in ImageJ, The
> first channel of a 3-channel ZVI doesn't import.
> 
> The imported image has 3 channels, and channel 1 is correct. However,
> apparent channel 2 is a duplicate of the real channel 1, apparent channel 3
> is the actual channel 2, and the expected channel 3 does not load. Loci
> version 4.4.0 works correctly installed into a clean ImageJ. Haven't tried
> intermediate versions.

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