[ome-users] Fwd: Suppressing Verbose Output in MATLAB
Melissa Linkert
melissa at glencoesoftware.com
Fri Oct 26 00:03:00 BST 2012
Hi Dan,
> I am using the LOCI bioformats script "bfopen.m" to open Nikon nd2 images
> in MATLAB. The plugin works, but it spits out a bunch of garbage in the
> MATLAB command window (see below for example). This is merely annoying for
> a single image, but for a script that is intended to process hundreds of
> images it is a major problem because it obscures the few outputs that I
> actually want to see, and probably also slows down my code. Can you please
> tell me how to suppress this output?
The extra output can be turned off by changing the logging level in line
89 of bfopen.m:
loci.common.DebugTools.enableLogging('INFO');
If you use 'WARN' or 'ERROR' instead of 'INFO', that should
substantially reduce the amount of output that you see.
Regards,
-Melissa
On Thu, Oct 25, 2012 at 12:51:18PM +0200, Curtis Rueden wrote:
> ---------- Forwarded message ----------
> From: <ddickins at live.unc.edu>
> Date: Wed, Oct 24, 2012 at 9:04 PM
> Subject: [Software Feedback] Suppressing Verbose Output in MATLAB
> To: ctrueden at wisc.edu
>
> Hi,
>
> I am using the LOCI bioformats script "bfopen.m" to open Nikon nd2 images
> in MATLAB. The plugin works, but it spits out a bunch of garbage in the
> MATLAB command window (see below for example). This is merely annoying for
> a single image, but for a script that is intended to process hundreds of
> images it is a major problem because it obscures the few outputs that I
> actually want to see, and probably also slows down my code. Can you please
> tell me how to suppress this output?
>
> Thanks for any advice!
> Dan Dickinson
>
>
> Example of the garbage:
>
> >> image = bfopen('/Volumes/Timpano/**Exp108/108_PAR3+Ab_1
> nd2/108_PAR3_+Ab_1_044.nd2');
> Searching for blocks
> 5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
> 5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
> 5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
> Parsing block 'ND2 FILE SIG' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILE SIG' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILE SIG' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILE SIG' 0%
> Parsing block 'ImageMetadat' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> Parsing block 'ImageMetadat' 0%
> 5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> Parsing block 'ImageCalibra' 0%
> 5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> 5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> 5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> Parsing block 'ImageCalibra' 0%
> 5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> 5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> 5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 0%
> Parsing block 'ImageMetadat' 0%
> 5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> Parsing block 'ImageMetadat' 0%
> 5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> 5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 0%
> Parsing block 'ImageCalibra' 1%
> 5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> 5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> 5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> Parsing block 'ImageCalibra' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageCalibra' 1%
> Parsing block 'ImageMetadat' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> 5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> Parsing block 'ImageMetadat' 1%
> 5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> 5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> 5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 1%
> Parsing block 'ImageAttribu' 2%
> 5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> 5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> 5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> Parsing block 'ImageAttribu' 2%
> 5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> 5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> 5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 2%
> Parsing block 'ImageDataSeq' 2%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 2%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 2%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 2%
> Parsing block 'ImageDataSeq' 7%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 7%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 7%
> 5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 7%
> Parsing block 'ImageDataSeq' 11%
> 5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 11%
> 5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 11%
> 5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 11%
> Parsing block 'ImageDataSeq' 16%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 16%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 16%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 16%
> Parsing block 'ImageDataSeq' 21%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 21%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 21%
> 5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 21%
> Parsing block 'ImageDataSeq' 26%
> 5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 26%
> 5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 26%
> 5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 26%
> Parsing block 'ImageDataSeq' 31%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 31%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 31%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 31%
> Parsing block 'ImageDataSeq' 35%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 35%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 35%
> 5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 35%
> Parsing block 'ImageDataSeq' 40%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 40%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 40%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 40%
> Parsing block 'ImageDataSeq' 45%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 45%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 45%
> 5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 45%
> Parsing block 'ImageDataSeq' 50%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 50%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 50%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 50%
> Parsing block 'ImageDataSeq' 55%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 55%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 55%
> 5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 55%
> Parsing block 'ImageDataSeq' 60%
> 5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 60%
> 5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 60%
> 5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 60%
> Parsing block 'ImageDataSeq' 64%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 64%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 64%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 64%
> Parsing block 'ImageDataSeq' 69%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 69%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 69%
> 5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 69%
> Parsing block 'ImageDataSeq' 74%
> 5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 74%
> 5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 74%
> 5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 74%
> Parsing block 'ImageDataSeq' 79%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 79%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 79%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 79%
> Parsing block 'ImageDataSeq' 84%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 84%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 84%
> 5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 84%
> Parsing block 'ImageDataSeq' 89%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 89%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 89%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 89%
> Parsing block 'ImageDataSeq' 93%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 93%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 93%
> 5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageDataSeq' 93%
> Parsing block 'ImageMetadat' 98%
> 5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> 5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> 5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> Parsing block 'ImageMetadat' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageMetadat' 98%
> Parsing block 'ImageEvents!' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEvents!' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEvents!' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEvents!' 98%
> Parsing block 'ImageEventsL' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEventsL' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEventsL' 98%
> 5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageEventsL' 98%
> Parsing block 'ImageTextInf' 98%
> 5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageTextInf' 98%
> 5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageTextInf' 98%
> 5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageTextInf' 98%
> Parsing block 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> Parsing block 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> Parsing block 'CustomDataVa' 98%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 98%
> Parsing block 'CustomDataVa' 99%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> Parsing block 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> Parsing block 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> Parsing block 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> Parsing block 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> 5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|P' 99%
> Parsing block 'CustomData|X' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|X' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|X' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|X' 99%
> Parsing block 'CustomData|Y' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Y' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Y' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Y' 99%
> Parsing block 'CustomData|Z' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Z' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Z' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|Z' 99%
> Parsing block 'CustomData|N' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|N' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|N' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|N' 99%
> Parsing block 'CustomData|R' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|R' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|R' 99%
> 5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|R' 99%
> Parsing block 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> Parsing block 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomData|A' 99%
> Parsing block 'CustomDataVa' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'CustomDataVa' 99%
> Parsing block 'ImageAttribu' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> 5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> Parsing block 'ImageAttribu' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
> 'ImageAttribu' 99%
> Parsing block 'ND2 FILEMAP ' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILEMAP ' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILEMAP ' 99%
> 5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
> FILEMAP ' 99%
> Expected positive value for PhysicalSizeZ; got 0.0
> 5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
> value for PhysicalSizeZ; got 0.0
> 5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
> value for PhysicalSizeZ; got 0.0
> 5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
> value for PhysicalSizeZ; got 0.0
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