[ome-users] Fwd: Suppressing Verbose Output in MATLAB
Curtis Rueden
ctrueden at wisc.edu
Thu Oct 25 11:51:18 BST 2012
---------- Forwarded message ----------
From: <ddickins at live.unc.edu>
Date: Wed, Oct 24, 2012 at 9:04 PM
Subject: [Software Feedback] Suppressing Verbose Output in MATLAB
To: ctrueden at wisc.edu
Hi,
I am using the LOCI bioformats script "bfopen.m" to open Nikon nd2 images
in MATLAB. The plugin works, but it spits out a bunch of garbage in the
MATLAB command window (see below for example). This is merely annoying for
a single image, but for a script that is intended to process hundreds of
images it is a major problem because it obscures the few outputs that I
actually want to see, and probably also slows down my code. Can you please
tell me how to suppress this output?
Thanks for any advice!
Dan Dickinson
Example of the garbage:
>> image = bfopen('/Volumes/Timpano/**Exp108/108_PAR3+Ab_1
nd2/108_PAR3_+Ab_1_044.nd2');
Searching for blocks
5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
5858961 [Run$_main] INFO loci.formats.FormatHandler - Searching for blocks
Parsing block 'ND2 FILE SIG' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILE SIG' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILE SIG' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILE SIG' 0%
Parsing block 'ImageMetadat' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858962 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
Parsing block 'ImageMetadat' 0%
5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858963 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
Parsing block 'ImageCalibra' 0%
5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
5858964 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
Parsing block 'ImageCalibra' 0%
5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
5858965 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 0%
Parsing block 'ImageMetadat' 0%
5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858966 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
Parsing block 'ImageMetadat' 0%
5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
5858984 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 0%
Parsing block 'ImageCalibra' 1%
5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
5858986 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
Parsing block 'ImageCalibra' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageCalibra' 1%
Parsing block 'ImageMetadat' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
5858988 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
Parsing block 'ImageMetadat' 1%
5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
5859003 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 1%
Parsing block 'ImageAttribu' 2%
5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
5859005 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
Parsing block 'ImageAttribu' 2%
5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
5859007 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 2%
Parsing block 'ImageDataSeq' 2%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 2%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 2%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 2%
Parsing block 'ImageDataSeq' 7%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 7%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 7%
5859008 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 7%
Parsing block 'ImageDataSeq' 11%
5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 11%
5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 11%
5859009 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 11%
Parsing block 'ImageDataSeq' 16%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 16%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 16%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 16%
Parsing block 'ImageDataSeq' 21%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 21%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 21%
5859010 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 21%
Parsing block 'ImageDataSeq' 26%
5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 26%
5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 26%
5859011 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 26%
Parsing block 'ImageDataSeq' 31%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 31%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 31%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 31%
Parsing block 'ImageDataSeq' 35%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 35%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 35%
5859012 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 35%
Parsing block 'ImageDataSeq' 40%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 40%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 40%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 40%
Parsing block 'ImageDataSeq' 45%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 45%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 45%
5859013 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 45%
Parsing block 'ImageDataSeq' 50%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 50%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 50%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 50%
Parsing block 'ImageDataSeq' 55%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 55%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 55%
5859014 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 55%
Parsing block 'ImageDataSeq' 60%
5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 60%
5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 60%
5859015 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 60%
Parsing block 'ImageDataSeq' 64%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 64%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 64%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 64%
Parsing block 'ImageDataSeq' 69%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 69%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 69%
5859016 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 69%
Parsing block 'ImageDataSeq' 74%
5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 74%
5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 74%
5859017 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 74%
Parsing block 'ImageDataSeq' 79%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 79%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 79%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 79%
Parsing block 'ImageDataSeq' 84%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 84%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 84%
5859018 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 84%
Parsing block 'ImageDataSeq' 89%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 89%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 89%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 89%
Parsing block 'ImageDataSeq' 93%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 93%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 93%
5859019 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageDataSeq' 93%
Parsing block 'ImageMetadat' 98%
5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
5859020 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
Parsing block 'ImageMetadat' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageMetadat' 98%
Parsing block 'ImageEvents!' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEvents!' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEvents!' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEvents!' 98%
Parsing block 'ImageEventsL' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEventsL' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEventsL' 98%
5859021 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageEventsL' 98%
Parsing block 'ImageTextInf' 98%
5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageTextInf' 98%
5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageTextInf' 98%
5859022 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageTextInf' 98%
Parsing block 'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
Parsing block 'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859023 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
Parsing block 'CustomDataVa' 98%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 98%
Parsing block 'CustomDataVa' 99%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859024 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
Parsing block 'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
Parsing block 'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
Parsing block 'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
Parsing block 'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
5859025 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|P' 99%
Parsing block 'CustomData|X' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|X' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|X' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|X' 99%
Parsing block 'CustomData|Y' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Y' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Y' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Y' 99%
Parsing block 'CustomData|Z' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Z' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Z' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|Z' 99%
Parsing block 'CustomData|N' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|N' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|N' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|N' 99%
Parsing block 'CustomData|R' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|R' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|R' 99%
5859026 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|R' 99%
Parsing block 'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
Parsing block 'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomData|A' 99%
Parsing block 'CustomDataVa' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'CustomDataVa' 99%
Parsing block 'ImageAttribu' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
5859027 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
Parsing block 'ImageAttribu' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block
'ImageAttribu' 99%
Parsing block 'ND2 FILEMAP ' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILEMAP ' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILEMAP ' 99%
5859028 [Run$_main] INFO loci.formats.FormatHandler - Parsing block 'ND2
FILEMAP ' 99%
Expected positive value for PhysicalSizeZ; got 0.0
5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
value for PhysicalSizeZ; got 0.0
5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
value for PhysicalSizeZ; got 0.0
5859034 [Run$_main] WARN loci.formats.FormatHandler - Expected positive
value for PhysicalSizeZ; got 0.0
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