[ome-users] Bioformats Problem

[Melissa Linkert]

Hi Josh,

> I am getting this error when opening files in Bioformats.

Which version of Bio-Formats are you using ("Help > About Plugins > LOCI
Plugins" will tell you)?  If the date shown is more than a week or two
ago, then please first try updating to the latest trunk build of
loci_tools.jar:

http://loci.wisc.edu/bio-formats/downloads

If that doesn't help, then would you be willing to send one of the
datasets that produces this error message?

Regards,
-Melissa

On Thu, May 17, 2012 at 07:22:20AM -0400, Joshua Bembenek wrote:
> Hello,
> 
> I am getting this error when opening files in Bioformats.
> 
> 
> loci.formats.FormatException: Unable to locate at lease one valid STK file!
>        at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:519)
>        at loci.formats.FormatReader.setId(FormatReader.java:1072)
>        at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:481)
>        at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
>        at loci.plugins.in.Importer.showDialogs(Importer.java:125)
>        at loci.plugins.in.Importer.run(Importer.java:77)
>        at loci.plugins.LociImporter.run(LociImporter.java:79)
>        at ij.IJ.runUserPlugIn(IJ.java:184)
>        at ij.IJ.runPlugIn(IJ.java:151)
>        at ij.Executer.runCommand(Executer.java:124)
>        at ij.Executer.run(Executer.java:61)
>        at java.lang.Thread.run(Thread.java:655)
> 
> 
> I am using ImageJ 1.43u with Java 1.5.0_30 (32-bit). What am I doing wrong?
> 
> 
> 
> On Wed, May 16, 2012 at 5:32 PM,
> <ome-users-owner at lists.openmicroscopy.org.uk> wrote:
> > You are not allowed to post to this mailing list, and your message has
> > been automatically rejected.  If you think that your messages are
> > being rejected in error, contact the mailing list owner at
> > ome-users-owner at lists.openmicroscopy.org.uk.
> >
> >
> >
> > ---------- Forwarded message ----------
> > From: Joshua Bembenek <jnbembenek at gmail.com>
> > To: ome-users at lists.openmicroscopy.org.uk
> > Cc:
> > Date: Wed, 16 May 2012 17:32:03 -0400
> > Subject: Bioformats Problem
> > Hello,
> >
> > I am getting this error when opening files in Bioformats.
> >
> >
> > loci.formats.FormatException: Unable to locate at lease one valid STK file!
> >        at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:519)
> >        at loci.formats.FormatReader.setId(FormatReader.java:1072)
> >        at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:481)
> >        at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
> >        at loci.plugins.in.Importer.showDialogs(Importer.java:125)
> >        at loci.plugins.in.Importer.run(Importer.java:77)
> >        at loci.plugins.LociImporter.run(LociImporter.java:79)
> >        at ij.IJ.runUserPlugIn(IJ.java:184)
> >        at ij.IJ.runPlugIn(IJ.java:151)
> >        at ij.Executer.runCommand(Executer.java:124)
> >        at ij.Executer.run(Executer.java:61)
> >        at java.lang.Thread.run(Thread.java:655)
> >
> >
> > I am using ImageJ 1.43u with Java 1.5.0_30 (32-bit). What am I doing wrong?
> >
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