[ome-users] Problem with big images

harri.jaalinoja at helsinki.fi harri.jaalinoja at helsinki.fi
Thu Jun 14 15:54:03 BST 2012


Hello,
we have problems looking at big images. In the UI the image stays  
thumbnail sized, and in the logs I find these errors:

Blitz.log
2012-06-14 17:31:18,548 INFO  [                 
ome.io.nio.PixelsService] (l.Server-1) Missing  
pyramid:/data/OMERO/Pixels/107_pyramid
2012-06-14 17:31:18,549 INFO  [                  
org.perf4j.TimingLogger] (l.Server-1) start[1339684278492] time[57]  
tag[omero.call.excepti
on]
2012-06-14 17:31:18,549 INFO  [         
ome.services.util.ServiceHandler] (l.Server-1)  Excp:     
ome.conditions.MissingPyramidException: Mi


PixelData.log

2012-06-14 17:44:52,019 ERROR [              
org.quartz.core.JobRunShell] (3-thread-3) Job  
DEFAULT.pixelDataThreadRun threw an unhandled Exception:
org.springframework.scheduling.quartz.JobMethodInvocationFailedException:  
Invocation of method 'run' on target class [class  
ome.services.pixeldata.PixelDataThread] failed; nested exception is  
ome.conditions.InternalException: The configuration table seems to be  
missing
from your database. Please check your server installation instructions
for possible reasons.
         at  
org.springframework.scheduling.quartz.MethodInvokingJobDetailFactoryBean$MethodInvokingJob.executeInternal(MethodInvokingJobDetailFactoryBean.java:273)
         at  
org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86)
         at org.quartz.core.JobRunShell.run(JobRunShell.java:203)
         at  
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
         at  
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
         at java.lang.Thread.run(Thread.java:722)
Caused by: ome.conditions.InternalException: The configuration table  
seems to be missing
from your database. Please check your server installation instructions
for possible reasons.
         at  
ome.services.eventlogs.PersistentEventLogLoader.getCurrentId(PersistentEventLogLoader.java:86)
         at  
ome.services.pixeldata.PersistentEventLogLoader.query(PersistentEventLogLoader.java:57)
         at  
ome.services.eventlogs.EventLogLoader.hasNext(EventLogLoader.java:137)
         at  
ome.services.pixeldata.PixelDataHandler.doWork(PixelDataHandler.java:81)



Indexer.log

2012-06-14 17:35:12,026 ERROR [    
ome.services.fulltext.FullTextIndexer] (3-thread-5) Unknown action  
type: PIXELDATA
2012-06-14 17:35:32,025 ERROR [    
ome.services.fulltext.FullTextIndexer] (3-thread-5) Unknown action  
type: PIXELDATA
2012-06-14 17:35:40,034 ERROR [    
ome.services.fulltext.FullTextIndexer] (3-thread-4) Unknown action  
type: PIXELDATA
2012-06-14 17:35:44,039 ERROR [    
ome.services.fulltext.FullTextIndexer] (3-thread-2) Unknown action  
type: PIXELDATA



What are we missing in the installation?

Thanks, best regards,
Harri




More information about the ome-users mailing list