[ome-users] Problem with big images

[Josh Moore]

Hi Harri,

could you send the entire PixelData.log (off-list is fine)

~J.

On Jun 14, 2012, at 4:54 PM, harri.jaalinoja at helsinki.fi wrote:

> 
> Hello,
> we have problems looking at big images. In the UI the image stays thumbnail sized, and in the logs I find these errors:
> 
> Blitz.log
> 2012-06-14 17:31:18,548 INFO  [                ome.io.nio.PixelsService] (l.Server-1) Missing pyramid:/data/OMERO/Pixels/107_pyramid
> 2012-06-14 17:31:18,549 INFO  [                 org.perf4j.TimingLogger] (l.Server-1) start[1339684278492] time[57] tag[omero.call.excepti
> on]
> 2012-06-14 17:31:18,549 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Excp:    ome.conditions.MissingPyramidException: Mi
> 
> 
> PixelData.log
> 
> 2012-06-14 17:44:52,019 ERROR [             org.quartz.core.JobRunShell] (3-thread-3) Job DEFAULT.pixelDataThreadRun threw an unhandled Exception:
> org.springframework.scheduling.quartz.JobMethodInvocationFailedException: Invocation of method 'run' on target class [class ome.services.pixeldata.PixelDataThread] failed; nested exception is ome.conditions.InternalException: The configuration table seems to be missing
> from your database. Please check your server installation instructions
> for possible reasons.
>       at org.springframework.scheduling.quartz.MethodInvokingJobDetailFactoryBean$MethodInvokingJob.executeInternal(MethodInvokingJobDetailFactoryBean.java:273)
>       at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86)
>       at org.quartz.core.JobRunShell.run(JobRunShell.java:203)
>       at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
>       at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
>       at java.lang.Thread.run(Thread.java:722)
> Caused by: ome.conditions.InternalException: The configuration table seems to be missing
> from your database. Please check your server installation instructions
> for possible reasons.
>       at ome.services.eventlogs.PersistentEventLogLoader.getCurrentId(PersistentEventLogLoader.java:86)
>       at ome.services.pixeldata.PersistentEventLogLoader.query(PersistentEventLogLoader.java:57)
>       at ome.services.eventlogs.EventLogLoader.hasNext(EventLogLoader.java:137)
>       at ome.services.pixeldata.PixelDataHandler.doWork(PixelDataHandler.java:81)
> 
> 
> 
> Indexer.log
> 
> 2012-06-14 17:35:12,026 ERROR [   ome.services.fulltext.FullTextIndexer] (3-thread-5) Unknown action type: PIXELDATA
> 2012-06-14 17:35:32,025 ERROR [   ome.services.fulltext.FullTextIndexer] (3-thread-5) Unknown action type: PIXELDATA
> 2012-06-14 17:35:40,034 ERROR [   ome.services.fulltext.FullTextIndexer] (3-thread-4) Unknown action type: PIXELDATA
> 2012-06-14 17:35:44,039 ERROR [   ome.services.fulltext.FullTextIndexer] (3-thread-2) Unknown action type: PIXELDATA
> 
> 
> 
> What are we missing in the installation?
> 
> Thanks, best regards,
> Harri
> 
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