[ome-users] ImageJ plugin in 4.4-RC2

[Josh Moore]

On Jul 10, 2012, at 11:27 AM, Harri Jäälinoja wrote:

> Hi Melissa and Josh,

Hi Harri,

> On 06/07/12 16:36, Melissa Linkert wrote:
>> http://hudson.openmicroscopy.org.uk/view/Bio-Formats/job/BIOFORMATS-trunk/lastSuccessfulBuild/artifact/artifacts/loci_tools.jar
>> 
>> While Fiji includes that already, it likely contains an older version
>> than OMERO.imagej 4.4-RC2 is expecting, so updating may make things work
>> (or at least, it will eliminate one possible cause of the problem).
> 
> I downloaded the loci_tools.jar as you suggested and put it in the plugins directory of Fiji, but this did not help.
> 
>>> You might see if there is anything in ~/omero/log/omeroinsight.log. Failing that, you can try to take a stack dump of fiji. How are you launching Fiji? Also, what exact download did you try?
>>> 
> 
> I downloaded OMERO.imagej-4.4.0-RC2-ice33-b3016.zip. There is nothing in omeroinsight.log. I start Fiji from command line:
> 
> hajaalin at biotek973:~/Fiji.app$ ./fiji-linux64
> Re-executing with correct library lookup path (:/home/hajaalin/BioImageXD-1.0RC2/VTK/lib:/home/hajaalin/BioImageXD-1.0RC2/VTK/lib/vtk-5.6:/home/hajaalin/BioImageXD-1.0RC2/ITK/lib/InsightToolkit:/home/hajaalin/BioImageXD-1.0RC2/ITK/lib/InsightToolkit/WrapITK/lib:/home/hajaalin/Fiji.app/lib/linux64)
> 
> Usually some errors would show up here, as the output is not directed anywhere? How can I take a stack dump here?

Hi Harri,

could you try the latest OMERO.insight-ij build from:

  http://hudson.openmicroscopy.org.uk/job/OMERO-trunk/3028/

i.e.:

  http://hudson.openmicroscopy.org.uk/job/OMERO-trunk/3028/artifact/src/target/OMERO.insight-ij-4.4.0-RC2-188-da0c55d-ice33-b3028.zip

You'll still need the new loci_tools.jar.

Cheers,
~Josh



> Cheers,
> Harri
>