[ome-users] ImageJ plugin in 4.4-RC2

[Jean-Marie Burel]

On 11/07/2012 16:07, "Josh Moore" <josh at glencoesoftware.com> wrote:

>
>On Jul 10, 2012, at 11:27 AM, Harri Jäälinoja wrote:
>
>> Hi Melissa and Josh,
>
>Hi Harri,
>
>> On 06/07/12 16:36, Melissa Linkert wrote:
>>>
>>>http://hudson.openmicroscopy.org.uk/view/Bio-Formats/job/BIOFORMATS-trun
>>>k/lastSuccessfulBuild/artifact/artifacts/loci_tools.jar
>>>
>>> While Fiji includes that already, it likely contains an older version
>>> than OMERO.imagej 4.4-RC2 is expecting, so updating may make things
>>>work
>>> (or at least, it will eliminate one possible cause of the problem).
>>
>> I downloaded the loci_tools.jar as you suggested and put it in the
>>plugins directory of Fiji, but this did not help.
>>
>>>> You might see if there is anything in ~/omero/log/omeroinsight.log.
>>>>Failing that, you can try to take a stack dump of fiji. How are you
>>>>launching Fiji? Also, what exact download did you try?
>>>>
>>
>> I downloaded OMERO.imagej-4.4.0-RC2-ice33-b3016.zip. There is nothing
>>in omeroinsight.log. I start Fiji from command line:
>>
>> hajaalin at biotek973:~/Fiji.app$ ./fiji-linux64
>> Re-executing with correct library lookup path
>>(:/home/hajaalin/BioImageXD-1.0RC2/VTK/lib:/home/hajaalin/BioImageXD-1.0R
>>C2/VTK/lib/vtk-5.6:/home/hajaalin/BioImageXD-1.0RC2/ITK/lib/InsightToolki
>>t:/home/hajaalin/BioImageXD-1.0RC2/ITK/lib/InsightToolkit/WrapITK/lib:/ho
>>me/hajaalin/Fiji.app/lib/linux64)
>>
>> Usually some errors would show up here, as the output is not directed
>>anywhere? How can I take a stack dump here?
>
>Hi Harri,
>
>could you try the latest OMERO.insight-ij build from:
>
>  http://hudson.openmicroscopy.org.uk/job/OMERO-trunk/3028/
>
>i.e.:
>
>
>http://hudson.openmicroscopy.org.uk/job/OMERO-trunk/3028/artifact/src/targ
>et/OMERO.insight-ij-4.4.0-RC2-188-da0c55d-ice33-b3028.zip
>
>You'll still need the new loci_tools.jar.

And ome-io.jar installed in the ImageJ/Plugins folder in order to work.

Jmarie
>
>Cheers,
>~Josh
>
>
>
>> Cheers,
>> Harri
>>
>
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