[ome-users] Fwd: bioformats, matlab & Leica Files

[Curtis Rueden]

Hi Christian,

I am forwarding your question to the OME-users mailing list.

Regards,
Curtis


---------- Forwarded message ----------
From: <cawurm at web.de>
Date: Mon, Apr 16, 2012 at 11:15 AM
Subject: [Software Feedback] bioformats, matlab & Leica Files
To: ctrueden at wisc.edu


Christian Wurm sent a message using the contact form at
http://loci.wisc.edu/contact.

Dear Sir or Madam,
I try to use bioformats to import Leica .lif-Files into matlab using the
bfopen.m script.
Opening single images, series etc works very well.

To evaluate the data I further need to import the metadata of the files as
described in your info. Especially I'm interested in the stack sizes and
voxel sizes in x, y and z. After that I try to retrieve the data of
interest by using 'metadata.get', unfortunately I constantly end up with
empty variables ....
Alternatively I have all metadata in a single variable.
Could you please tell me how to retrieve the voxel and stack sizes from the
metadata file?!
Thanks in advance,
Christian
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20120416/09f122b9/attachment.html>