[ome-users] Unable to load images using latest ImageJ plugin

[Will Moore]

Hi Mark,

  You're right. The Bio-Formats plugin is required by the OMERO IJ  
plugin and we need to document this better.

Does this also fix the opening of images imported with older OMERO  
versions?

   Will.


On 19 Jul 2011, at 15:18, Mark Woodbridge wrote:

> It's now working for me with ImageJ 1.44... the only thing I did was  
> delete and re-import the relevant LSM file into OMERO. Does the  
> plugin depend on some metadata that wouldn't have been available if  
> the file was imported using an older version of OMERO? I don't know  
> if Will and Martin's error is related.
>
> By the way, I also found that I couldn't load any images (even JPEG)  
> from OMERO to ImageJ unless I installed the Bio-Formats plugin. This  
> confused me for a while so if this step is necessary then perhaps  
> you could add it to the documentation?
>
> Thanks for your help,
>
> Mark.
>
> On 19/07/11 14:51, Curtis Rueden wrote:
>> Hi Mark & Will,
>>
>> You can change versions of ImageJ by selecting Help > Update ImageJ  
>> from
>> the menu.
>>
>> Also, did either of you try the latest version of 1.45?
>>
>> -Curtis
>>
>> On Tue, Jul 19, 2011 at 4:06 AM, Will Moore  
>> <will at lifesci.dundee.ac.uk
>> <mailto:will at lifesci.dundee.ac.uk>> wrote:
>>
>>    Hi Mark,
>>
>>    OK, so I do see the same issue as you when I install ImageJ from
>>    that location: ImageJ 1.44
>>
>>    But I don't see the problem with my existing ImageJ install, which
>>    is ImageJ 1.43r.
>>
>>    I'll create a ticket for this, but in the meantime you might  
>> want to
>>    see if you can find 1.43 (or maybe try a different version). If  
>> not,
>>    I can send you mine!
>>
>>    Cheers,
>>
>>    Will
>>
>>
>>    On 18 Jul 2011, at 13:32, Will Moore wrote:
>>
>>        Hi
>>
>>        - Sorry, just noticed you said "clean" install.
>>
>>        I'll try installing from the same place and see what I get.
>>        Currently I'm not seeing an error, so somethings different.
>>
>>        Will.
>>
>>        On 18 Jul 2011, at 13:29, Will Moore wrote:
>>
>>            Hi Mark,
>>
>>            Can you check whether you have any old plugins that may be
>>            causing a conflict?
>>
>>            "If you have ome-tools.jar in your plugins directory you
>>            need to remove it."
>>            is from this discussion:
>>            https://www.openmicroscopy.__org.uk/community/viewtopic.__php?f=5&t=727
>>            <https://www.openmicroscopy.org.uk/community/viewtopic.php?f=5&t=727 
>> >
>>
>>            Hope that helps?
>>
>>            Will.
>>
>>
>>            On 18 Jul 2011, at 09:35, Mark Woodbridge wrote:
>>
>>                Hi,
>>
>>                When clicking 'View' or double-clicking on an image in
>>                the ImageJ OMERO browser I get the message 'An error
>>                occurred while loading the image.'
>>
>>                This is when using a clean install of:
>>
>>                http://rsbweb.nih.gov/ij/__download/zips/ij144.zip
>>                <http://rsbweb.nih.gov/ij/download/zips/ij144.zip>
>>
>>                with
>>
>>                http://cvs.openmicroscopy.org.__uk/snapshots/omero/ 
>> OMERO.__imagej-4.3.1.zip
>>                <http://cvs.openmicroscopy.org.uk/snapshots/omero/OMERO.imagej-4.3.1.zip 
>> >
>>
>>                and Sun JRE 1.6.0_26 on Linux with OMERO server 4.3.1.
>>
>>                There is no stack trace printed. Martin has seen the
>>                same problem on Windows.
>>
>>                Mark.
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>>
>>
>>            William Moore
>>            Wellcome Trust Centre for Gene Regulation & Expression
>>            College of Life Sciences
>>            MSI/WTB/JBC Complex
>>            University of Dundee
>>            Dow Street
>>            Dundee DD1 5EH
>>            United Kingdom
>>
>>            Phone 01382 386364
>>            http://openmicroscopy.org
>>
>>
>>
>>
>>
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>>
>>
>>        William Moore
>>        Wellcome Trust Centre for Gene Regulation & Expression
>>        College of Life Sciences
>>        MSI/WTB/JBC Complex
>>        University of Dundee
>>        Dow Street
>>        Dundee DD1 5EH
>>        United Kingdom
>>
>>        Phone 01382 386364
>>        http://openmicroscopy.org
>>
>>
>>
>>
>>
>>
>>    William Moore
>>    Wellcome Trust Centre for Gene Regulation & Expression
>>    College of Life Sciences
>>    MSI/WTB/JBC Complex
>>    University of Dundee
>>    Dow Street
>>    Dundee DD1 5EH
>>    United Kingdom
>>
>>    Phone 01382 386364
>>    http://openmicroscopy.org
>>
>>
>>
>>
>>
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William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Phone 01382 386364
http://openmicroscopy.org