[ome-users] installing omero-server problems

[Chris Allan]

Running /etc/init.d/icegridnode isn't something you need to do and is actually causing your problems. OMERO does this for you, in its own way so starting icegridnode via the init script is colliding with the OMERO startup.

You'll want to run "/etc/init.d/icegridnode stop" and stop it from starting in whatever runlevel you're currently using.

-Chris

On 20 Jan 2011, at 09:53, camelia botez wrote:

> I try to install OMERO-sever-beta-4.2.2 - i installed all prerequisites
> ( some compiling from sources , some with rpm ) on centos 5 platform.
> I installed  Ice soft using rpms and I start it
> from /etc/init.d/icegridnode start - OK.
> I ran all the pre-commnds from omero's docs and I try to run
> 
> ~OMERO_HOME/bin/omero admin start  - I get:
> 
> [omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin diagnostics
> 
> ================================================================================
> OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
> ================================================================================
> 
> Commands:   java -version                  1.6.0     (/usr/bin/java)
> Commands:   python -V                      2.4.3     (/usr/bin/python)
> Commands:   icegridnode --version          3.3.1
> (/usr/bin/icegridnode)
> Commands:   icegridadmin --version         3.3.1
> (/usr/bin/icegridadmin)
> Commands:   psql --version                 8.1.22    (/usr/bin/psql)
> 
> Server:     icegridnode                    not started
> 
> Log dir:    /home/omero/OMERO.server-Beta-4.2.2/var/log exists
> 
> Log files:  Blitz-0.log                    n/a
> Log files:  DropBox.log                    n/a
> Log files:  FileServer.log                 n/a
> Log files:  Indexer-0.log                  n/a
> Log files:  MonitorServer.log              n/a
> Log files:  OMEROweb.log                   0.0 KB
> Log files:  Processor-0.log                n/a
> Log files:  Tables-0.log                   n/a
> Log files:  TestDropBox.log                n/a
> Log files:  Total size                     0.00 MB
> 
> Error while parsing logs
> 
> Environment:OMERO_HOME=/home/omero/OMERO.server-Beta-4.2.2
> Environment:OMERO_NODE=node1
> Environment:OMERO_MASTER=
> Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
> Environment:ICE_HOME=/usr/local/src/CCG/Ice-3.3.1-64
> Environment:LD_LIBRARY_PATH=/usr/lib64/python2.4:/usr/lib64
> Environment:DYLD_LIBRARY_PATH=(unset)
> 
> OMERO data dir: '/OMERO'        Exists? True    Is writable? True
> OMERO.web status... [NOT STARTED]
> [omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin start
> Could not find file: /home/omero/OMERO.server-Beta-4.2.2/etc/.cfg
> Did you specify the proper node?
> 
> 
> and if I run 
> 
> $OMERO_HOME/bin/omero admin disgnostics I get an output list different
> from docs (part of servers status is missing and icegridnode reported
> not runningeven I started it).
> [omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin diagnostics
> 
> ================================================================================
> OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
> ================================================================================
> 
> Commands:   java -version                  1.6.0     (/usr/bin/java)
> Commands:   python -V                      2.4.3     (/usr/bin/python)
> Commands:   icegridnode --version          3.3.1
> (/usr/bin/icegridnode)
> Commands:   icegridadmin --version         3.3.1
> (/usr/bin/icegridadmin)
> Commands:   psql --version                 8.1.22    (/usr/bin/psql)
> 
> Server:     icegridnode                    not started
> 
> Log dir:    /home/omero/OMERO.server-Beta-4.2.2/var/log exists
> 
> Log files:  Blitz-0.log                    n/a
> Log files:  DropBox.log                    n/a
> Log files:  FileServer.log                 n/a
> Log files:  Indexer-0.log                  n/a
> Log files:  MonitorServer.log              n/a
> Log files:  OMEROweb.log                   0.0 KB
> Log files:  Processor-0.log                n/a
> Log files:  Tables-0.log                   n/a
> Log files:  TestDropBox.log                n/a
> Log files:  Total size                     0.00 MB
> 
> Error while parsing logs
> 
> Environment:OMERO_HOME=/home/omero/OMERO.server-Beta-4.2.2
> Environment:OMERO_NODE=(unset)
> Environment:OMERO_MASTER=(unset)
> Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
> Environment:ICE_HOME=(unset)
> Environment:LD_LIBRARY_PATH=/usr/lib64/python2.4:/usr/lib64
> Environment:DYLD_LIBRARY_PATH=(unset)
> 
> OMERO data dir: '/OMERO'        Exists? True    Is writable? True
> OMERO.web status... [NOT STARTED]
> 
> 
> What I'm missing here that I cannot start omero?
> 
> Thank for any help
> 
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