[ome-users] installing omero-server problems

camelia botez camelia.botez at weizmann.ac.il
Thu Jan 20 09:53:22 GMT 2011


I try to install OMERO-sever-beta-4.2.2 - i installed all prerequisites
( some compiling from sources , some with rpm ) on centos 5 platform.
I installed  Ice soft using rpms and I start it
from /etc/init.d/icegridnode start - OK.
I ran all the pre-commnds from omero's docs and I try to run

~OMERO_HOME/bin/omero admin start  - I get:

[omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin diagnostics

================================================================================
OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
================================================================================

Commands:   java -version                  1.6.0     (/usr/bin/java)
Commands:   python -V                      2.4.3     (/usr/bin/python)
Commands:   icegridnode --version          3.3.1
(/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1
(/usr/bin/icegridadmin)
Commands:   psql --version                 8.1.22    (/usr/bin/psql)

Server:     icegridnode                    not started

Log dir:    /home/omero/OMERO.server-Beta-4.2.2/var/log exists

Log files:  Blitz-0.log                    n/a
Log files:  DropBox.log                    n/a
Log files:  FileServer.log                 n/a
Log files:  Indexer-0.log                  n/a
Log files:  MonitorServer.log              n/a
Log files:  OMEROweb.log                   0.0 KB
Log files:  Processor-0.log                n/a
Log files:  Tables-0.log                   n/a
Log files:  TestDropBox.log                n/a
Log files:  Total size                     0.00 MB

Error while parsing logs

Environment:OMERO_HOME=/home/omero/OMERO.server-Beta-4.2.2
Environment:OMERO_NODE=node1
Environment:OMERO_MASTER=
Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
Environment:ICE_HOME=/usr/local/src/CCG/Ice-3.3.1-64
Environment:LD_LIBRARY_PATH=/usr/lib64/python2.4:/usr/lib64
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: '/OMERO'        Exists? True    Is writable? True
OMERO.web status... [NOT STARTED]
[omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin start
Could not find file: /home/omero/OMERO.server-Beta-4.2.2/etc/.cfg
Did you specify the proper node?


and if I run 

$OMERO_HOME/bin/omero admin disgnostics I get an output list different
from docs (part of servers status is missing and icegridnode reported
not runningeven I started it).
[omero at bioinfo01 OMERO.server-Beta-4.2.2]$ bin/omero admin diagnostics

================================================================================
OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
================================================================================

Commands:   java -version                  1.6.0     (/usr/bin/java)
Commands:   python -V                      2.4.3     (/usr/bin/python)
Commands:   icegridnode --version          3.3.1
(/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1
(/usr/bin/icegridadmin)
Commands:   psql --version                 8.1.22    (/usr/bin/psql)

Server:     icegridnode                    not started

Log dir:    /home/omero/OMERO.server-Beta-4.2.2/var/log exists

Log files:  Blitz-0.log                    n/a
Log files:  DropBox.log                    n/a
Log files:  FileServer.log                 n/a
Log files:  Indexer-0.log                  n/a
Log files:  MonitorServer.log              n/a
Log files:  OMEROweb.log                   0.0 KB
Log files:  Processor-0.log                n/a
Log files:  Tables-0.log                   n/a
Log files:  TestDropBox.log                n/a
Log files:  Total size                     0.00 MB

Error while parsing logs

Environment:OMERO_HOME=/home/omero/OMERO.server-Beta-4.2.2
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=/usr/lib64/python2.4:/usr/lib64
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: '/OMERO'        Exists? True    Is writable? True
OMERO.web status... [NOT STARTED]


What I'm missing here that I cannot start omero?

Thank for any help




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