[ome-users] Installation Problems on Red Hat EL 5.2

[Will Moore]

Hi Todd,

  You have become a victim of our slightly un-synchronised release of  
OMERO 4.2.
We have been updating our on-line docs in preparation for the 4.2  
release, which is very imminent.
The bin/omero web start
command is for 4.2 and you have 4.1.

The 4.1 install docs have been moved here
https://www.openmicroscopy.org.uk/site/support/omero4/server/archives/4.1/installation

or you could wait for 4.2 (hopefully tomorrow)!

  Cheers,

     Will.



On 13 Jul 2010, at 22:34, Todd H. Stokes wrote:

>
> Hello,
>
> I've been working on setting up OMERO on our database server for the  
> past couple of days to do an evaluation. We'll be getting a new  
> Zeiss microscope soon that will be generating a lot of data, so I'm  
> looking forward to having a robust data management tool. Thanks!
>
> I have worked through a number of issues related to the  
> dependencies, and have just now started getting sensible results  
> from the "bin/omero admin start" command.
>
> Strangely, even though my server does partially start, the "bin/ 
> omero web start" command says:
> Bad arguments: start
> omero web settings
> [and then gives the valid commands]
> maybe the "start" command only becomes valid once the server start  
> check succeeds?
>
> I am attaching the results of the admin diagnostics and the log  
> directory.
>
> Thanks for you help!
> Todd
>
>
>
> 2010-07-13 16:49:16,923 ERROR  
> [                       fsserver.FSServer] (MainThread) System  
> requirements not met:
> Traceback (most recent call last):
> File "lib/python/fsServer.py", line 43, in run
>   import fsMonitorServer
> File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/ 
> fsMonitorServer.py", line 23, in <module>
>   from fsMonitor import MonitorFactory
> File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/ 
> fsMonitor.py", line 21, in <module>
>   PlatformMonitor = __import__(fsUtil.monitorPackage())
> File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/ 
> fsUtil.py", line 117, in monitorPackage
>   raise Exception("Libraries required by OMERO.fs monitor  
> unavailable: " + errorString)
> Exception: Libraries required by OMERO.fs monitor unavailable:  
> pyinotify 0.7 or 0.8 required. Package not found.
> 2010-07-13 16:49:16,925 INFO   
> [                       fsserver.FSServer] (MainThread) Exiting with  
> exit code: -1
>
>
> <omero_logs.zip>
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> OMERO Diagnostics Beta-4.1.1-r5927-b91
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
>
> Commands:   java -version                  1.6.0     (/usr/bin/java)
> Commands:   python -V                      2.6.5     (/opt/python/ 
> bin/python -- 2 others)
> Commands:   icegridnode --version          3.3.1     (/opt/Ice-3.3.1/ 
> bin/icegridnode)
> Commands:   icegridadmin --version         3.3.1     (/opt/Ice-3.3.1/ 
> bin/icegridadmin)
> Commands:   psql --version                 8.1.21    (/usr/bin/psql)
>
> Server:     icegridnode                    running
> Server:     Blitz-0                        inactive (disabled)
> Server:     DropBox                        inactive (disabled)
> Server:     FSServer                       inactive (disabled)
> Server:     Indexer-0                      inactive (disabled)
> Server:     OMERO.Glacier2                 active (pid = 2908,  
> enabled)
> Server:     OMERO.IceStorm                 active (pid = 2910,  
> enabled)
> Server:     Processor-0                    activating (enabled)
> Server:     Tables-0                       inactive (disabled)
> Server:     TestDropBox                    inactive (enabled)
> Server:     Web                            inactive (enabled)
>
> Log dir:    /var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/var/ 
> log exists
>
> Log files:  Blitz-0.log                    107.0 KB      errors=5     
> warnings=9
> Log files:  DropBox.log                    2.0 KB        errors=6     
> warnings=0
> Log files:  FSServer.log                   2.0 KB        errors=3     
> warnings=0
> Log files:  Indexer-0.log                  91.0 KB       errors=5     
> warnings=9
> Log files:  OMEROweb.log                   0.0 KB
> Log files:  OMEROweb.log.2010-07-12        0.0 KB
> Log files:  OMEROweb.log.2010-07-13        0.0 KB
> Log files:  Processor-0.log                143.0 KB      errors=37    
> warnings=259
> Log files:  Tables-0.log                   n/a
> Log files:  TestDropBox.log                n/a
> Log files:  master.err                     3.0 KB        errors=0     
> warnings=6
> Log files:  master.out                     0.0 KB
> Log files:  Total size                     0.35 MB
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users

William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Phone 01382 386364
http://openmicroscopy.org.uk