[ome-users] Installation Problems on Red Hat EL 5.2
Björn Quast
bquast at evolution.uni-bonn.de
Wed Jul 14 01:08:25 BST 2010
Hi Todd,
I think Wills reply mean that you should use the following commands to start
the Web service instead of > bin/omero web start if you want to use the django
web server:
$ bin/omero admin ice
this logs you in to the omero(?) console, where you should insert the
following commands.
>>> server enable Web
>>> server start Web
>>> exit
I just wonder about this nice futuristic docs a few days ago.
Björn
> Hi Todd,
>
> You have become a victim of our slightly un-synchronised release of
> OMERO 4.2.
> We have been updating our on-line docs in preparation for the 4.2
> release, which is very imminent.
> The bin/omero web start
> command is for 4.2 and you have 4.1.
>
> The 4.1 install docs have been moved here
> https://www.openmicroscopy.org.uk/site/support/omero4/server/archives/4.1/i
> nstallation
>
> or you could wait for 4.2 (hopefully tomorrow)!
>
> Cheers,
>
> Will.
>
> On 13 Jul 2010, at 22:34, Todd H. Stokes wrote:
> > Hello,
> >
> > I've been working on setting up OMERO on our database server for the
> > past couple of days to do an evaluation. We'll be getting a new
> > Zeiss microscope soon that will be generating a lot of data, so I'm
> > looking forward to having a robust data management tool. Thanks!
> >
> > I have worked through a number of issues related to the
> > dependencies, and have just now started getting sensible results
> > from the "bin/omero admin start" command.
> >
> > Strangely, even though my server does partially start, the "bin/
> > omero web start" command says:
> > Bad arguments: start
> > omero web settings
> > [and then gives the valid commands]
> > maybe the "start" command only becomes valid once the server start
> > check succeeds?
> >
> > I am attaching the results of the admin diagnostics and the log
> > directory.
> >
> > Thanks for you help!
> > Todd
> >
> >
> >
> > 2010-07-13 16:49:16,923 ERROR
> > [ fsserver.FSServer] (MainThread) System
> > requirements not met:
> > Traceback (most recent call last):
> > File "lib/python/fsServer.py", line 43, in run
> >
> > import fsMonitorServer
> >
> > File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/
> > fsMonitorServer.py", line 23, in <module>
> >
> > from fsMonitor import MonitorFactory
> >
> > File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/
> > fsMonitor.py", line 21, in <module>
> >
> > PlatformMonitor = __import__(fsUtil.monitorPackage())
> >
> > File "/var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/lib/python/
> > fsUtil.py", line 117, in monitorPackage
> >
> > raise Exception("Libraries required by OMERO.fs monitor
> >
> > unavailable: " + errorString)
> > Exception: Libraries required by OMERO.fs monitor unavailable:
> > pyinotify 0.7 or 0.8 required. Package not found.
> > 2010-07-13 16:49:16,925 INFO
> > [ fsserver.FSServer] (MainThread) Exiting with
> > exit code: -1
> >
> >
> > <omero_logs.zip>
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> >
======================================================================
> > OMERO Diagnostics Beta-4.1.1-r5927-b91
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> > =
> >
======================================================================
> >
> > Commands: java -version 1.6.0 (/usr/bin/java)
> > Commands: python -V 2.6.5 (/opt/python/
> > bin/python -- 2 others)
> > Commands: icegridnode --version 3.3.1 (/opt/Ice-3.3.1/
> > bin/icegridnode)
> > Commands: icegridadmin --version 3.3.1 (/opt/Ice-3.3.1/
> > bin/icegridadmin)
> > Commands: psql --version 8.1.21 (/usr/bin/psql)
> >
> > Server: icegridnode running
> > Server: Blitz-0 inactive (disabled)
> > Server: DropBox inactive (disabled)
> > Server: FSServer inactive (disabled)
> > Server: Indexer-0 inactive (disabled)
> > Server: OMERO.Glacier2 active (pid = 2908,
> > enabled)
> > Server: OMERO.IceStorm active (pid = 2910,
> > enabled)
> > Server: Processor-0 activating (enabled)
> > Server: Tables-0 inactive (disabled)
> > Server: TestDropBox inactive (enabled)
> > Server: Web inactive (enabled)
> >
> > Log dir: /var/home/tstokes/Desktop/SRM_tcga/OME/omero_dist/var/
> > log exists
> >
> > Log files: Blitz-0.log 107.0 KB errors=5
> > warnings=9
> > Log files: DropBox.log 2.0 KB errors=6
> > warnings=0
> > Log files: FSServer.log 2.0 KB errors=3
> > warnings=0
> > Log files: Indexer-0.log 91.0 KB errors=5
> > warnings=9
> > Log files: OMEROweb.log 0.0 KB
> > Log files: OMEROweb.log.2010-07-12 0.0 KB
> > Log files: OMEROweb.log.2010-07-13 0.0 KB
> > Log files: Processor-0.log 143.0 KB errors=37
> > warnings=259
> > Log files: Tables-0.log n/a
> > Log files: TestDropBox.log n/a
> > Log files: master.err 3.0 KB errors=0
> > warnings=6
> > Log files: master.out 0.0 KB
> > Log files: Total size 0.35 MB
> > _______________________________________________
> > ome-users mailing list
> > ome-users at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
> William Moore
> Wellcome Trust Centre for Gene Regulation & Expression
> College of Life Sciences
> MSI/WTB/JBC Complex
> University of Dundee
> Dow Street
> Dundee DD1 5EH
> United Kingdom
>
> Phone 01382 386364
> http://openmicroscopy.org.uk
>
>
>
>
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