[ome-users] Repository on share?
McCaughey, Michael J
michael.j.mccaughey at Vanderbilt.Edu
Fri Nov 6 16:22:58 GMT 2009
Okay, here goes:
Chris-
Here's the output from diagnostics:
mrmike at cisrome omero_dist]$ bin/omero admin diagnostics
================================================================================
OMERO Diagnostics Beta-4.1.0-r5585-b12
================================================================================
Commands: java -version 1.6.0 (/usr/bin/java)
Commands: python -V error:'NoneType' object has no attribute 'group'
Commands: icegridnode --version 3.3 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.3 (/usr/bin/icegridadmin)
Commands: psql --version 8.3.8 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 8144, enabled)
Server: DropBox inactive (disabled)
Server: FSServer inactive (disabled)
Server: Indexer-0 active (pid = 8161, enabled)
Server: OMERO.Glacier2 active (pid = 8174, enabled)
Server: OMERO.IceStorm active (pid = 8184, enabled)
Server: Processor-0 active (pid = 8185, enabled)
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Server: Web inactive (enabled)
Log dir: /home/mrmike/Documents/omero_dist/var/log exists
Log files: Blitz-0.log 21.0 MB errors=37 warnings=39229
Log files: DropBox.log 10.0 KB errors=10 warnings=0
Log files: FSServer.log 4.0 KB errors=5 warnings=0
Log files: Indexer-0.log 6.0 MB errors=0 warnings=39212
Log files: OMEROweb.log 0.0 KB
Log files: OMEROweb.log.2009-10-30 32.0 KB errors=26 warnings=2
Log files: OMEROweb.log.2009-10-31 0.0 KB errors=2 warnings=0
Log files: OMEROweb.log.2009-11-02 1.0 KB errors=2 warnings=2
Log files: OMEROweb.log.2009-11-03 0.0 KB
Log files: Processor-0.log 12.0 KB errors=0 warnings=12
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 12.0 MB errors=0 warnings=78406
Log files: master.out 0.0 KB
Log files: Total size 40.01 MB
>From the Blitz log, I start the server, then login as root on the Web.admin and try checking disk space, then wait around for something to happen:
2009-11-06 10:04:19,723 INFO [ ome.services.blitz.Entry] (
main) Creating OMERO.blitz. Please wait...
2009-11-06 10:04:21,900 WARN [ java.util.prefs] (
main) Could not create system preferences directory. System preferences are unus
able.
2009-11-06 10:04:21,947 WARN [ java.util.prefs] (
main) Prefs file removed in background /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x
86_64/jre/.systemPrefs/prefs.xml
2009-11-06 10:04:22,034 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] (
main) Initializing EHCache CacheManager
2009-11-06 10:04:26,113 INFO [ ome.services.fulltext.FullTextAnalyzer] (
main) Initialized FullTextAnalyzer
2009-11-06 10:04:51,046 INFO [ ome.system.PermissionsContext] (
main) Setting omero.security.default_permissions to rw----
2009-11-06 10:04:51,326 INFO [ ome.services.fulltext.FullTextThread] (
main) Initializing Full-Text Indexer
2009-11-06 10:04:51,351 INFO [ ome.services.util.DBPatchCheck] (
main) Verified database patch: OMERO4.1__0
2009-11-06 10:04:51,351 INFO [ ome.services.util.ServerVersionCheck] (
main) -------------------------------------------------
2009-11-06 10:04:51,352 INFO [ ome.services.util.ServerVersionCheck] (
main) OMERO Version: Beta-4.1.0-r5585-b12 Ready.
2009-11-06 10:04:51,352 INFO [ ome.services.util.ServerVersionCheck] (
main) -------------------------------------------------
2009-11-06 10:04:53,188 WARN [ ome.system.UpgradeCheck] (
main) UPGRADE AVAILABLE:Please upgrade to Beta-4.1.0 See http://trac.openmicrosc
opy.org.uk/omero for the latest version
2009-11-06 10:04:53,189 INFO [ ome.tools.hibernate.ExtendedMetadata] (
main) Calculating ExtendedMetadata...
2009-11-06 10:04:53,402 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:04:53,402 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:04:53,516 INFO [e.services.blitz.util.BlitzConfiguration] (
main) Initializing Ice.Communicator
2009-11-06 10:04:53,883 INFO [ ome.services.blitz.fire.Ring] (
main) Checking cluster
2009-11-06 10:04:53,927 INFO [ ome.services.blitz.fire.Registry] (
main) Found 0 cluster node(s) : []
2009-11-06 10:04:53,927 INFO [ ome.services.blitz.fire.Ring] (
main) Got 0 cluster uuids : []
2009-11-06 10:04:53,938 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
2009-11-06 10:04:53,938 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 2d04cf67]
2009-11-06 10:04:53,984 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=null(Internal),sess=3900f5cc-44f3-4bf3-9bb7
-ea0b70fc84f7
2009-11-06 10:04:54,042 INFO [ org.perf4j.TimingLogger] (
main) start[1257523493938] time[104] tag[omero.call.success]
2009-11-06 10:04:54,042 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: (3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42)
2009-11-06 10:04:54,043 INFO [ ome.services.blitz.fire.Ring] (
main) Purging node: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42
2009-11-06 10:04:54,082 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set close
d = now()
2009-11-06 10:04:54,082 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 23bdb02e]
2009-11-06 10:04:54,217 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=146601(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,256 INFO [ org.perf4j.TimingLogger] (
main) start[1257523494082] time[173] tag[omero.call.success]
2009-11-06 10:04:54,256 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: 0
2009-11-06 10:04:54,256 INFO [ ome.services.blitz.fire.Ring] (
main) Removed 0 entries with value 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42
2009-11-06 10:04:54,257 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown
2009-11-06 10:04:54,257 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 483457f1]
2009-11-06 10:04:54,286 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=146602(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,299 INFO [ org.perf4j.TimingLogger] (
main) start[1257523494257] time[42] tag[omero.call.success]
2009-11-06 10:04:54,299 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: 1
2009-11-06 10:04:54,300 INFO [ ome.services.blitz.fire.Ring] (
main) Removed manager: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42
2009-11-06 10:04:54,300 INFO [ ome.services.blitz.fire.Ring] (
main) handleRingShutdown: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42
2009-11-06 10:04:54,301 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.blitz.fire.Ring.addManager
2009-11-06 10:04:54,301 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 7730661d]
2009-11-06 10:04:54,319 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=146603(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,326 INFO [ ome.security.basic.CurrentDetails] (
main) Adding log:INSERT,class ome.model.meta.Node,201
2009-11-06 10:04:54,341 INFO [ org.perf4j.TimingLogger] (
main) start[1257523494301] time[40] tag[omero.call.success]
2009-11-06 10:04:54,341 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: ome.model.meta.Node:Id_201
2009-11-06 10:04:54,364 INFO [ ome.services.blitz.fire.Registry] (
main) Added ClusterNode/3900f5cc-44f3-4bf3-9bb7-ea0b70fc84f7 to registry
2009-11-06 10:04:54,371 INFO [ ome.system.PermissionsContext] (
main) Setting omero.security.default_permissions to rw----
2009-11-06 10:04:54,379 INFO [me.services.blitz.repo.LegacyRepositoryI] (
main) Initializing repository in /OMERODIR
2009-11-06 10:04:54,447 INFO [ ome.services.roi.PopulateRoiJob] (
main) Script found: 63a410e344cc22b2fcae09951137a5b59fb8baae
2009-11-06 10:04:54,448 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.roi.PopulateRoiJob.populateroi.py
2009-11-06 10:04:54,448 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 1664978b]
2009-11-06 10:04:54,486 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=146604(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,641 INFO [ org.perf4j.TimingLogger] (
main) start[1257523494448] time[193] tag[omero.call.success]
2009-11-06 10:04:54,641 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: ome.model.core.OriginalFile:Id_1
2009-11-06 10:04:54,646 INFO [ ome.services.scripts.MakeMovieJob] (
main) Script found: 5f408441299c22320dc56b8d12829d9e9fa814a2
2009-11-06 10:04:54,646 INFO [ ome.services.util.ServiceHandler] (
main) Executor.doWork -- ome.services.scripts.MakeMovieJob.makemovie.py
2009-11-06 10:04:54,646 INFO [ ome.services.util.ServiceHandler] (
main) Args: [null, ome.tools.spring.InternalServiceFactory at 73abdb5e]
2009-11-06 10:04:54,662 INFO [ ome.security.basic.EventHandler] (
main) Auth: user=0,group=0,event=146605(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,674 INFO [ org.perf4j.TimingLogger] (
main) start[1257523494646] time[28] tag[omero.call.success]
2009-11-06 10:04:54,674 INFO [ ome.services.util.ServiceHandler] (
main) Rslt: ome.model.core.OriginalFile:Id_2
2009-11-06 10:04:54,680 INFO [ ome.services.blitz.Entry] (
main) OMERO.blitz now accepting connections.
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work
er-0) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work
er-0) Args: [null, ome.tools.spring.InternalServiceFactory at 64b25680]
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work
er-9) Executor.doWork -- ome.services.roi.GeomTool.backgroundSynchronization
2009-11-06 10:04:54,687 INFO [ ome.services.util.ServiceHandler] (r_Work
er-9) Args: [null, ome.tools.spring.InternalServiceFactory at fbb41d7]
2009-11-06 10:04:54,717 INFO [ ome.security.basic.EventHandler] (r_Work
er-0) Auth: user=0,group=0,event=146606(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,732 INFO [ ome.security.basic.EventHandler] (r_Work
er-9) Auth: user=0,group=0,event=146607(Internal),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:04:54,739 INFO [ org.perf4j.TimingLogger] (r_Work
er-9) start[1257523494687] time[52] tag[omero.call.success]
2009-11-06 10:04:54,739 INFO [ ome.services.util.ServiceHandler] (r_Work
er-9) Rslt: 0
2009-11-06 10:04:54,864 INFO [me.services.blitz.repo.LegacyRepositoryI] (r_Work
er-0) Opened repository: f8624fa3-f646-4ea9-8b0c-c5c837888ae2
2009-11-06 10:04:54,874 INFO [ ome.services.blitz.fire.Registry] (r_Work
er-0) Updated InternalRepository-f8624fa3-f646-4ea9-8b0c-c5c837888ae2 in registr
y
2009-11-06 10:04:54,881 INFO [ ome.services.blitz.fire.Registry] (r_Work
er-0) Updated PublicRepository-f8624fa3-f646-4ea9-8b0c-c5c837888ae2 in registry
2009-11-06 10:04:54,886 INFO [me.services.blitz.repo.LegacyRepositoryI] (r_Work
er-0) Repository now active
2009-11-06 10:04:54,891 INFO [ org.perf4j.TimingLogger] (r_Work
er-0) start[1257523494686] time[205] tag[omero.call.success]
2009-11-06 10:04:54,891 INFO [ ome.services.util.ServiceHandler] (r_Work
er-0) Rslt: null
2009-11-06 10:05:03,916 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession
2009-11-06 10:05:03,917 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-2) Args: [null, ome.tools.spring.InternalServiceFactory at 548ea21d]
2009-11-06 10:05:03,944 INFO [ ome.security.basic.EventHandler] (l.Serv
er-2) Auth: user=0,group=0,event=146608(Sessions),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:05:03,994 INFO [ ome.security.basic.CurrentDetails] (l.Serv
er-2) Adding log:INSERT,class ome.model.meta.Session,462
2009-11-06 10:05:04,049 INFO [ org.perf4j.TimingLogger] (l.Serv
er-2) start[1257523503917] time[132] tag[omero.call.success]
2009-11-06 10:05:04,049 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGr
oup:Id_0, [0, 1], ... 4 more)
2009-11-06 10:05:04,051 INFO [ ome.services.licenses.Store] (l.Serv
er-2) Acquired license from example license store.
2009-11-06 10:05:04,053 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Serv
er-2) Created session 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8 for user root
2009-11-06 10:05:20,113 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-8) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8
2009-11-06 10:05:23,402 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:05:23,402 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:05:53,401 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:05:53,401 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:06:00,011 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Work
er-6) Performing requestHeartbeats
2009-11-06 10:06:20,114 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8
2009-11-06 10:06:23,402 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:06:23,402 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:06:53,403 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:06:53,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:07:20,115 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8
2009-11-06 10:07:23,403 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:07:23,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:07:53,403 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:07:53,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:08:20,117 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8
2009-11-06 10:08:23,403 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:08:23,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:08:33,620 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckP
assword
2009-11-06 10:08:33,620 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-4) Args: [null, ome.tools.spring.InternalServiceFactory at 246fee3a]
2009-11-06 10:08:33,627 INFO [ ome.security.basic.EventHandler] (l.Serv
er-4) Auth: user=0,group=0,event=null(Sessions),sess=3900f5cc-44f3-4bf3-9bb7
-ea0b70fc84f7
2009-11-06 10:08:33,638 INFO [ org.perf4j.TimingLogger] (l.Serv
er-4) start[1257523713620] time[18] tag[omero.call.success]
2009-11-06 10:08:33,638 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-4) Rslt: true
2009-11-06 10:08:33,640 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-6) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession
2009-11-06 10:08:33,640 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-6) Args: [null, ome.tools.spring.InternalServiceFactory at 1c344a47]
2009-11-06 10:08:33,661 INFO [ ome.security.basic.EventHandler] (l.Serv
er-6) Auth: user=0,group=0,event=146609(Sessions),sess=3900f5cc-44f3-4bf3-9b
b7-ea0b70fc84f7
2009-11-06 10:08:33,697 INFO [ ome.security.basic.CurrentDetails] (l.Serv
er-6) Adding log:INSERT,class ome.model.meta.Session,463
2009-11-06 10:08:33,746 INFO [ org.perf4j.TimingLogger] (l.Serv
er-6) start[1257523713640] time[106] tag[omero.call.success]
2009-11-06 10:08:33,747 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-6) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGr
oup:Id_0, [0, 1], ... 4 more)
2009-11-06 10:08:33,747 INFO [ ome.services.licenses.Store] (l.Serv
er-6) Acquired license from example license store.
2009-11-06 10:08:33,755 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Serv
er-6) Created session 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae for user root
2009-11-06 10:08:33,758 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-2) session-5e4fe9d2-803b-4c56-b767-19b98f90eea8/1eb7cc94-007e-4414-ba9f-6bbb6
5ee49ae set callback to ClientCallback/5e4fe9d2-803b-4c56-b767-19b98f90eea8 -t:t
cp -h 160.129.189.179 -p 37180:tcp -h 192.168.122.1 -p 37180
2009-11-06 10:08:33,787 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-7) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I
Session(omero.api._ISessionTie at 7cf1cdfb)
2009-11-06 10:08:33,811 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Meth: interface ome.api.ISession.getSession
2009-11-06 10:08:33,812 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Args: [1eb7cc94-007e-4414-ba9f-6bbb65ee49ae]
2009-11-06 10:08:33,812 INFO [ org.perf4j.TimingLogger] (l.Serv
er-8) start[1257523713812] time[0] tag[omero.call.success]
2009-11-06 10:08:33,812 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Rslt: ome.model.meta.Session:Id_463
2009-11-06 10:08:34,113 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-0) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I
Admin(omero.api._IAdminTie at 26d7ad36)
2009-11-06 10:08:34,124 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Meth: interface ome.api.IAdmin.getEventContext
2009-11-06 10:08:34,124 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Args: ()
2009-11-06 10:08:34,127 INFO [ ome.security.basic.EventHandler] (l.Serv
er-5) Auth: user=0,group=0,event=null(Internal),sess=1eb7cc94-007e-4414-ba9f
-6bbb65ee49ae
2009-11-06 10:08:34,128 INFO [ org.perf4j.TimingLogger] (l.Serv
er-5) start[1257523714124] time[4] tag[omero.call.success]
2009-11-06 10:08:34,128 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Rslt: ome.system.SimpleEventContext at 4ec12ad8
2009-11-06 10:08:34,132 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-3) Meth: interface ome.api.IAdmin.getExperimenter
2009-11-06 10:08:34,132 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-3) Args: [0]
2009-11-06 10:08:34,150 INFO [ ome.security.basic.EventHandler] (l.Serv
er-3) Auth: user=0,group=0,event=146610(Internal),sess=1eb7cc94-007e-4414-ba
9f-6bbb65ee49ae
2009-11-06 10:08:34,163 INFO [ org.perf4j.TimingLogger] (l.Serv
er-3) start[1257523714132] time[30] tag[omero.call.success]
2009-11-06 10:08:34,163 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-3) Rslt: ome.model.meta.Experimenter:Id_0
2009-11-06 10:08:34,195 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-1) Meth: interface ome.api.IAdmin.lookupGroup
2009-11-06 10:08:34,195 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-1) Args: [user]
2009-11-06 10:08:34,210 INFO [ ome.security.basic.EventHandler] (l.Serv
er-1) Auth: user=0,group=0,event=146611(Internal),sess=1eb7cc94-007e-4414-ba
9f-6bbb65ee49ae
2009-11-06 10:08:34,239 INFO [ org.perf4j.TimingLogger] (l.Serv
er-1) start[1257523714195] time[44] tag[omero.call.success]
2009-11-06 10:08:34,240 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-1) Rslt: ome.model.meta.ExperimenterGroup:Id_1
2009-11-06 10:08:34,340 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-4) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae
2009-11-06 10:08:34,442 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-6) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae
2009-11-06 10:08:34,535 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-2) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae
2009-11-06 10:08:34,543 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-7) Meth: interface ome.api.IAdmin.lookupExperimenters
2009-11-06 10:08:34,543 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-7) Args: ()
2009-11-06 10:08:34,558 INFO [ ome.security.basic.EventHandler] (l.Serv
er-7) Auth: user=0,group=0,event=146612(Internal),sess=1eb7cc94-007e-4414-ba
9f-6bbb65ee49ae
2009-11-06 10:08:34,596 INFO [ org.perf4j.TimingLogger] (l.Serv
er-7) start[1257523714543] time[53] tag[omero.call.success]
2009-11-06 10:08:34,596 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-7) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.Experimenter:I
d_1, ome.model.meta.Experimenter:Id_2, ... 4 more)
2009-11-06 10:08:34,621 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Meth: interface ome.api.IAdmin.lookupLdapAuthExperimenters
2009-11-06 10:08:34,622 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Args: ()
2009-11-06 10:08:34,624 INFO [ ome.security.basic.EventHandler] (l.Serv
er-8) Auth: user=0,group=0,event=null(Internal),sess=1eb7cc94-007e-4414-ba9f
-6bbb65ee49ae
2009-11-06 10:08:34,627 INFO [ org.perf4j.TimingLogger] (l.Serv
er-8) start[1257523714622] time[5] tag[omero.call.success]
2009-11-06 10:08:34,627 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-8) Rslt: ()
2009-11-06 10:08:37,131 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-9) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae
2009-11-06 10:08:37,146 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-0) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I
RepositoryInfo(omero.api._IRepositoryInfoTie at 70d00109)
2009-11-06 10:08:37,151 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Meth: interface ome.api.IRepositoryInfo.getFreeSpaceInKilobytes
2009-11-06 10:08:37,151 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Args: ()
2009-11-06 10:08:37,167 INFO [ ome.security.basic.EventHandler] (l.Serv
er-5) Auth: user=0,group=0,event=146613(Internal),sess=1eb7cc94-007e-4414-ba
9f-6bbb65ee49ae
2009-11-06 10:08:37,303 INFO [ ome.logic.RepositoryInfoImpl] (l.Serv
er-5) Total kilobytes free: 491982624
2009-11-06 10:08:37,307 INFO [ org.perf4j.TimingLogger] (l.Serv
er-5) start[1257523717151] time[156] tag[omero.call.success]
2009-11-06 10:08:37,307 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-5) Rslt: 491982624
2009-11-06 10:08:37,310 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-3) Meth: interface ome.api.IRepositoryInfo.getUsedSpaceInKilobytes
2009-11-06 10:08:37,311 INFO [ ome.services.util.ServiceHandler] (l.Serv
er-3) Args: ()
2009-11-06 10:08:37,333 INFO [ ome.security.basic.EventHandler] (l.Serv
er-3) Auth: user=0,group=0,event=146614(Internal),sess=1eb7cc94-007e-4414-ba
9f-6bbb65ee49ae
2009-11-06 10:08:53,402 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:08:53,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:09:00,019 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Work
er-0) Performing requestHeartbeats
2009-11-06 10:09:20,118 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8
2009-11-06 10:09:23,403 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:09:23,403 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
2009-11-06 10:09:53,406 WARN [ java.util.prefs] ( Tim
er-0) Could not lock System prefs. Unix error code 0.
2009-11-06 10:09:53,407 WARN [ java.util.prefs] ( Tim
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn
't get file lock.
[mrmike at cisrome omero_dist]$
Output of df-k:
[mrmike at cisrome OMEROOLD]$ df -k /OMERODIR
Filesystem 1K-blocks Used Available Use% Mounted on
//bluearc.mc.vanderbilt.edu/cisrweb
6442450944 5952519104 489931840 93% /OMERODIR
Michael J. McCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175
-----Original Message-----
From: Chris Allan [mailto:callan at lifesci.dundee.ac.uk]
Sent: Fri 11/6/2009 6:51 AM
To: McCaughey, Michael J
Subject: Re: [ome-users] Repository on share?
Hi Mike,
We regularly run repositories on shares, just not CIFS. Few things:
* Can you send us the output of "bin/omero admin diagnostics"?
* After attempting to view disk size, can you also have a look in var/
log/Blitz-0.log to see if there is an exception there?
* What does df -k /path/to/repository show?
-Chris
On 2 Nov 2009, at 18:34, McCaughey, Michael J wrote:
> I'm attempting to host an Omero4.1.0 server data repository on a
> cifs-mounted network share. The share is owned by the same user
> that is running omero. On startup, the user runs with no logged
> errors related to the repository. While I can create (empty)
> projects and datasets using both Omero.insight and Omero.importer, I
> cannot import files because the importer cannot find the available
> disk size. Attempts to view disk size in any client (.insight or
> WedAdmin) timeout. When the repository is on a local disk (same
> permissions/owner) it works fine.
>
> Does anyone with experience running the repository on a share have
> some insight into this?
>
> Thanks,
> Mike
>
> VUMC
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
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