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<TITLE>RE: [ome-users] Repository on share?</TITLE>
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<P><FONT SIZE=2>Okay, here goes:<BR>
Chris-<BR>
Here's the output from diagnostics:<BR>
<BR>
mrmike@cisrome omero_dist]$ bin/omero admin diagnostics<BR>
<BR>
================================================================================<BR>
OMERO Diagnostics Beta-4.1.0-r5585-b12<BR>
================================================================================<BR>
<BR>
Commands: java -version 1.6.0 (/usr/bin/java)<BR>
Commands: python -V error:'NoneType' object has no attribute 'group'<BR>
Commands: icegridnode --version 3.3 (/usr/bin/icegridnode)<BR>
Commands: icegridadmin --version 3.3 (/usr/bin/icegridadmin)<BR>
Commands: psql --version 8.3.8 (/usr/bin/psql)<BR>
<BR>
Server: icegridnode running<BR>
Server: Blitz-0 active (pid = 8144, enabled)<BR>
Server: DropBox inactive (disabled)<BR>
Server: FSServer inactive (disabled)<BR>
Server: Indexer-0 active (pid = 8161, enabled)<BR>
Server: OMERO.Glacier2 active (pid = 8174, enabled)<BR>
Server: OMERO.IceStorm active (pid = 8184, enabled)<BR>
Server: Processor-0 active (pid = 8185, enabled)<BR>
Server: Tables-0 inactive (disabled)<BR>
Server: TestDropBox inactive (enabled)<BR>
Server: Web inactive (enabled)<BR>
<BR>
Log dir: /home/mrmike/Documents/omero_dist/var/log exists<BR>
<BR>
Log files: Blitz-0.log 21.0 MB errors=37 warnings=39229<BR>
Log files: DropBox.log 10.0 KB errors=10 warnings=0 <BR>
Log files: FSServer.log 4.0 KB errors=5 warnings=0 <BR>
Log files: Indexer-0.log 6.0 MB errors=0 warnings=39212<BR>
Log files: OMEROweb.log 0.0 KB <BR>
Log files: OMEROweb.log.2009-10-30 32.0 KB errors=26 warnings=2 <BR>
Log files: OMEROweb.log.2009-10-31 0.0 KB errors=2 warnings=0 <BR>
Log files: OMEROweb.log.2009-11-02 1.0 KB errors=2 warnings=2 <BR>
Log files: OMEROweb.log.2009-11-03 0.0 KB <BR>
Log files: Processor-0.log 12.0 KB errors=0 warnings=12 <BR>
Log files: Tables-0.log n/a<BR>
Log files: TestDropBox.log n/a<BR>
Log files: master.err 12.0 MB errors=0 warnings=78406<BR>
Log files: master.out 0.0 KB <BR>
Log files: Total size 40.01 MB<BR>
<BR>
>From the Blitz log, I start the server, then login as root on the Web.admin and try checking disk space, then wait around for something to happen:<BR>
<BR>
2009-11-06 10:04:19,723 INFO [ ome.services.blitz.Entry] ( <BR>
main) Creating OMERO.blitz. Please wait...<BR>
2009-11-06 10:04:21,900 WARN [ java.util.prefs] ( <BR>
main) Could not create system preferences directory. System preferences are unus<BR>
able.<BR>
2009-11-06 10:04:21,947 WARN [ java.util.prefs] ( <BR>
main) Prefs file removed in background /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x<BR>
86_64/jre/.systemPrefs/prefs.xml<BR>
2009-11-06 10:04:22,034 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] ( <BR>
main) Initializing EHCache CacheManager<BR>
2009-11-06 10:04:26,113 INFO [ ome.services.fulltext.FullTextAnalyzer] ( <BR>
main) Initialized FullTextAnalyzer<BR>
2009-11-06 10:04:51,046 INFO [ ome.system.PermissionsContext] ( <BR>
main) Setting omero.security.default_permissions to rw----<BR>
2009-11-06 10:04:51,326 INFO [ ome.services.fulltext.FullTextThread] ( <BR>
main) Initializing Full-Text Indexer<BR>
2009-11-06 10:04:51,351 INFO [ ome.services.util.DBPatchCheck] ( <BR>
main) Verified database patch: OMERO4.1__0<BR>
2009-11-06 10:04:51,351 INFO [ ome.services.util.ServerVersionCheck] ( <BR>
main) -------------------------------------------------<BR>
2009-11-06 10:04:51,352 INFO [ ome.services.util.ServerVersionCheck] ( <BR>
main) OMERO Version: Beta-4.1.0-r5585-b12 Ready.<BR>
2009-11-06 10:04:51,352 INFO [ ome.services.util.ServerVersionCheck] ( <BR>
main) -------------------------------------------------<BR>
2009-11-06 10:04:53,188 WARN [ ome.system.UpgradeCheck] ( <BR>
main) UPGRADE AVAILABLE:Please upgrade to Beta-4.1.0 See <A HREF="http://trac.openmicrosc">http://trac.openmicrosc</A><BR>
opy.org.uk/omero for the latest version<BR>
2009-11-06 10:04:53,189 INFO [ ome.tools.hibernate.ExtendedMetadata] ( <BR>
main) Calculating ExtendedMetadata...<BR>
2009-11-06 10:04:53,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:04:53,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:04:53,516 INFO [e.services.blitz.util.BlitzConfiguration] ( <BR>
main) Initializing Ice.Communicator<BR>
2009-11-06 10:04:53,883 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) Checking cluster<BR>
2009-11-06 10:04:53,927 INFO [ ome.services.blitz.fire.Registry] ( <BR>
main) Found 0 cluster node(s) : []<BR>
2009-11-06 10:04:53,927 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) Got 0 cluster uuids : []<BR>
2009-11-06 10:04:53,938 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList<BR>
2009-11-06 10:04:53,938 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@2d04cf67]<BR>
2009-11-06 10:04:53,984 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=null(Internal),sess=3900f5cc-44f3-4bf3-9bb7<BR>
-ea0b70fc84f7<BR>
2009-11-06 10:04:54,042 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523493938] time[104] tag[omero.call.success]<BR>
2009-11-06 10:04:54,042 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: (3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42)<BR>
2009-11-06 10:04:54,043 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) Purging node: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42<BR>
2009-11-06 10:04:54,082 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set close<BR>
d = now()<BR>
2009-11-06 10:04:54,082 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@23bdb02e]<BR>
2009-11-06 10:04:54,217 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=146601(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,256 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523494082] time[173] tag[omero.call.success]<BR>
2009-11-06 10:04:54,256 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: 0<BR>
2009-11-06 10:04:54,256 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) Removed 0 entries with value 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42<BR>
2009-11-06 10:04:54,257 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown<BR>
2009-11-06 10:04:54,257 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@483457f1]<BR>
2009-11-06 10:04:54,286 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=146602(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,299 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523494257] time[42] tag[omero.call.success]<BR>
2009-11-06 10:04:54,299 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: 1<BR>
2009-11-06 10:04:54,300 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) Removed manager: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42<BR>
2009-11-06 10:04:54,300 INFO [ ome.services.blitz.fire.Ring] ( <BR>
main) handleRingShutdown: 3c28ff1f-49f0-4c8c-8a9d-74a7df31fe42<BR>
2009-11-06 10:04:54,301 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.blitz.fire.Ring.addManager<BR>
2009-11-06 10:04:54,301 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@7730661d]<BR>
2009-11-06 10:04:54,319 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=146603(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,326 INFO [ ome.security.basic.CurrentDetails] ( <BR>
main) Adding log:INSERT,class ome.model.meta.Node,201<BR>
2009-11-06 10:04:54,341 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523494301] time[40] tag[omero.call.success]<BR>
2009-11-06 10:04:54,341 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: ome.model.meta.Node:Id_201<BR>
2009-11-06 10:04:54,364 INFO [ ome.services.blitz.fire.Registry] ( <BR>
main) Added ClusterNode/3900f5cc-44f3-4bf3-9bb7-ea0b70fc84f7 to registry<BR>
2009-11-06 10:04:54,371 INFO [ ome.system.PermissionsContext] ( <BR>
main) Setting omero.security.default_permissions to rw----<BR>
2009-11-06 10:04:54,379 INFO [me.services.blitz.repo.LegacyRepositoryI] ( <BR>
main) Initializing repository in /OMERODIR<BR>
2009-11-06 10:04:54,447 INFO [ ome.services.roi.PopulateRoiJob] ( <BR>
main) Script found: 63a410e344cc22b2fcae09951137a5b59fb8baae<BR>
2009-11-06 10:04:54,448 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.roi.PopulateRoiJob.populateroi.py<BR>
2009-11-06 10:04:54,448 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@1664978b]<BR>
2009-11-06 10:04:54,486 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=146604(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,641 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523494448] time[193] tag[omero.call.success]<BR>
2009-11-06 10:04:54,641 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: ome.model.core.OriginalFile:Id_1<BR>
2009-11-06 10:04:54,646 INFO [ ome.services.scripts.MakeMovieJob] ( <BR>
main) Script found: 5f408441299c22320dc56b8d12829d9e9fa814a2<BR>
2009-11-06 10:04:54,646 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Executor.doWork -- ome.services.scripts.MakeMovieJob.makemovie.py<BR>
2009-11-06 10:04:54,646 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Args: [null, ome.tools.spring.InternalServiceFactory@73abdb5e]<BR>
2009-11-06 10:04:54,662 INFO [ ome.security.basic.EventHandler] ( <BR>
main) Auth: user=0,group=0,event=146605(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,674 INFO [ org.perf4j.TimingLogger] ( <BR>
main) start[1257523494646] time[28] tag[omero.call.success]<BR>
2009-11-06 10:04:54,674 INFO [ ome.services.util.ServiceHandler] ( <BR>
main) Rslt: ome.model.core.OriginalFile:Id_2<BR>
2009-11-06 10:04:54,680 INFO [ ome.services.blitz.Entry] ( <BR>
main) OMERO.blitz now accepting connections.<BR>
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-0) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover<BR>
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-0) Args: [null, ome.tools.spring.InternalServiceFactory@64b25680]<BR>
2009-11-06 10:04:54,686 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-9) Executor.doWork -- ome.services.roi.GeomTool.backgroundSynchronization<BR>
2009-11-06 10:04:54,687 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-9) Args: [null, ome.tools.spring.InternalServiceFactory@fbb41d7]<BR>
2009-11-06 10:04:54,717 INFO [ ome.security.basic.EventHandler] (r_Work<BR>
er-0) Auth: user=0,group=0,event=146606(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,732 INFO [ ome.security.basic.EventHandler] (r_Work<BR>
er-9) Auth: user=0,group=0,event=146607(Internal),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:04:54,739 INFO [ org.perf4j.TimingLogger] (r_Work<BR>
er-9) start[1257523494687] time[52] tag[omero.call.success]<BR>
2009-11-06 10:04:54,739 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-9) Rslt: 0<BR>
2009-11-06 10:04:54,864 INFO [me.services.blitz.repo.LegacyRepositoryI] (r_Work<BR>
er-0) Opened repository: f8624fa3-f646-4ea9-8b0c-c5c837888ae2<BR>
2009-11-06 10:04:54,874 INFO [ ome.services.blitz.fire.Registry] (r_Work<BR>
er-0) Updated InternalRepository-f8624fa3-f646-4ea9-8b0c-c5c837888ae2 in registr<BR>
y<BR>
2009-11-06 10:04:54,881 INFO [ ome.services.blitz.fire.Registry] (r_Work<BR>
er-0) Updated PublicRepository-f8624fa3-f646-4ea9-8b0c-c5c837888ae2 in registry<BR>
2009-11-06 10:04:54,886 INFO [me.services.blitz.repo.LegacyRepositoryI] (r_Work<BR>
er-0) Repository now active<BR>
2009-11-06 10:04:54,891 INFO [ org.perf4j.TimingLogger] (r_Work<BR>
er-0) start[1257523494686] time[205] tag[omero.call.success]<BR>
2009-11-06 10:04:54,891 INFO [ ome.services.util.ServiceHandler] (r_Work<BR>
er-0) Rslt: null<BR>
2009-11-06 10:05:03,916 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession<BR>
2009-11-06 10:05:03,917 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-2) Args: [null, ome.tools.spring.InternalServiceFactory@548ea21d]<BR>
2009-11-06 10:05:03,944 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-2) Auth: user=0,group=0,event=146608(Sessions),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:05:03,994 INFO [ ome.security.basic.CurrentDetails] (l.Serv<BR>
er-2) Adding log:INSERT,class ome.model.meta.Session,462<BR>
2009-11-06 10:05:04,049 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-2) start[1257523503917] time[132] tag[omero.call.success]<BR>
2009-11-06 10:05:04,049 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGr<BR>
oup:Id_0, [0, 1], ... 4 more)<BR>
2009-11-06 10:05:04,051 INFO [ ome.services.licenses.Store] (l.Serv<BR>
er-2) Acquired license from example license store.<BR>
2009-11-06 10:05:04,053 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Serv<BR>
er-2) Created session 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8 for user root<BR>
2009-11-06 10:05:20,113 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-8) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8<BR>
2009-11-06 10:05:23,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:05:23,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:05:53,401 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:05:53,401 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:06:00,011 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Work<BR>
er-6) Performing requestHeartbeats<BR>
2009-11-06 10:06:20,114 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8<BR>
2009-11-06 10:06:23,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:06:23,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:06:53,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:06:53,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:07:20,115 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8<BR>
2009-11-06 10:07:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:07:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:07:53,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:07:53,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:08:20,117 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8<BR>
2009-11-06 10:08:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:08:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:08:33,620 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckP<BR>
assword<BR>
2009-11-06 10:08:33,620 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-4) Args: [null, ome.tools.spring.InternalServiceFactory@246fee3a]<BR>
2009-11-06 10:08:33,627 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-4) Auth: user=0,group=0,event=null(Sessions),sess=3900f5cc-44f3-4bf3-9bb7<BR>
-ea0b70fc84f7<BR>
2009-11-06 10:08:33,638 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-4) start[1257523713620] time[18] tag[omero.call.success]<BR>
2009-11-06 10:08:33,638 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-4) Rslt: true<BR>
2009-11-06 10:08:33,640 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-6) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession<BR>
2009-11-06 10:08:33,640 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-6) Args: [null, ome.tools.spring.InternalServiceFactory@1c344a47]<BR>
2009-11-06 10:08:33,661 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-6) Auth: user=0,group=0,event=146609(Sessions),sess=3900f5cc-44f3-4bf3-9b<BR>
b7-ea0b70fc84f7<BR>
2009-11-06 10:08:33,697 INFO [ ome.security.basic.CurrentDetails] (l.Serv<BR>
er-6) Adding log:INSERT,class ome.model.meta.Session,463<BR>
2009-11-06 10:08:33,746 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-6) start[1257523713640] time[106] tag[omero.call.success]<BR>
2009-11-06 10:08:33,747 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-6) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGr<BR>
oup:Id_0, [0, 1], ... 4 more)<BR>
2009-11-06 10:08:33,747 INFO [ ome.services.licenses.Store] (l.Serv<BR>
er-6) Acquired license from example license store.<BR>
2009-11-06 10:08:33,755 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Serv<BR>
er-6) Created session 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae for user root<BR>
2009-11-06 10:08:33,758 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-2) session-5e4fe9d2-803b-4c56-b767-19b98f90eea8/1eb7cc94-007e-4414-ba9f-6bbb6<BR>
5ee49ae set callback to ClientCallback/5e4fe9d2-803b-4c56-b767-19b98f90eea8 -t:t<BR>
cp -h 160.129.189.179 -p 37180:tcp -h 192.168.122.1 -p 37180<BR>
2009-11-06 10:08:33,787 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-7) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I<BR>
Session(omero.api._ISessionTie@7cf1cdfb)<BR>
2009-11-06 10:08:33,811 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Meth: interface ome.api.ISession.getSession<BR>
2009-11-06 10:08:33,812 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Args: [1eb7cc94-007e-4414-ba9f-6bbb65ee49ae]<BR>
2009-11-06 10:08:33,812 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-8) start[1257523713812] time[0] tag[omero.call.success]<BR>
2009-11-06 10:08:33,812 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Rslt: ome.model.meta.Session:Id_463<BR>
2009-11-06 10:08:34,113 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-0) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I<BR>
Admin(omero.api._IAdminTie@26d7ad36)<BR>
2009-11-06 10:08:34,124 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Meth: interface ome.api.IAdmin.getEventContext<BR>
2009-11-06 10:08:34,124 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Args: ()<BR>
2009-11-06 10:08:34,127 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-5) Auth: user=0,group=0,event=null(Internal),sess=1eb7cc94-007e-4414-ba9f<BR>
-6bbb65ee49ae<BR>
2009-11-06 10:08:34,128 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-5) start[1257523714124] time[4] tag[omero.call.success]<BR>
2009-11-06 10:08:34,128 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Rslt: ome.system.SimpleEventContext@4ec12ad8<BR>
2009-11-06 10:08:34,132 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-3) Meth: interface ome.api.IAdmin.getExperimenter<BR>
2009-11-06 10:08:34,132 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-3) Args: [0]<BR>
2009-11-06 10:08:34,150 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-3) Auth: user=0,group=0,event=146610(Internal),sess=1eb7cc94-007e-4414-ba<BR>
9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,163 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-3) start[1257523714132] time[30] tag[omero.call.success]<BR>
2009-11-06 10:08:34,163 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-3) Rslt: ome.model.meta.Experimenter:Id_0<BR>
2009-11-06 10:08:34,195 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-1) Meth: interface ome.api.IAdmin.lookupGroup<BR>
2009-11-06 10:08:34,195 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-1) Args: [user]<BR>
2009-11-06 10:08:34,210 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-1) Auth: user=0,group=0,event=146611(Internal),sess=1eb7cc94-007e-4414-ba<BR>
9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,239 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-1) start[1257523714195] time[44] tag[omero.call.success]<BR>
2009-11-06 10:08:34,240 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-1) Rslt: ome.model.meta.ExperimenterGroup:Id_1<BR>
2009-11-06 10:08:34,340 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-4) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,442 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-6) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,535 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-2) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,543 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-7) Meth: interface ome.api.IAdmin.lookupExperimenters<BR>
2009-11-06 10:08:34,543 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-7) Args: ()<BR>
2009-11-06 10:08:34,558 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-7) Auth: user=0,group=0,event=146612(Internal),sess=1eb7cc94-007e-4414-ba<BR>
9f-6bbb65ee49ae<BR>
2009-11-06 10:08:34,596 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-7) start[1257523714543] time[53] tag[omero.call.success]<BR>
2009-11-06 10:08:34,596 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-7) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.Experimenter:I<BR>
d_1, ome.model.meta.Experimenter:Id_2, ... 4 more)<BR>
2009-11-06 10:08:34,621 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Meth: interface ome.api.IAdmin.lookupLdapAuthExperimenters<BR>
2009-11-06 10:08:34,622 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Args: ()<BR>
2009-11-06 10:08:34,624 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-8) Auth: user=0,group=0,event=null(Internal),sess=1eb7cc94-007e-4414-ba9f<BR>
-6bbb65ee49ae<BR>
2009-11-06 10:08:34,627 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-8) start[1257523714622] time[5] tag[omero.call.success]<BR>
2009-11-06 10:08:34,627 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-8) Rslt: ()<BR>
2009-11-06 10:08:37,131 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-9) Keep alive: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae<BR>
2009-11-06 10:08:37,146 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-0) Added servant to adapter: 1eb7cc94-007e-4414-ba9f-6bbb65ee49ae/omero.api.I<BR>
RepositoryInfo(omero.api._IRepositoryInfoTie@70d00109)<BR>
2009-11-06 10:08:37,151 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Meth: interface ome.api.IRepositoryInfo.getFreeSpaceInKilobytes<BR>
2009-11-06 10:08:37,151 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Args: ()<BR>
2009-11-06 10:08:37,167 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-5) Auth: user=0,group=0,event=146613(Internal),sess=1eb7cc94-007e-4414-ba<BR>
9f-6bbb65ee49ae<BR>
2009-11-06 10:08:37,303 INFO [ ome.logic.RepositoryInfoImpl] (l.Serv<BR>
er-5) Total kilobytes free: 491982624<BR>
2009-11-06 10:08:37,307 INFO [ org.perf4j.TimingLogger] (l.Serv<BR>
er-5) start[1257523717151] time[156] tag[omero.call.success]<BR>
2009-11-06 10:08:37,307 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-5) Rslt: 491982624<BR>
2009-11-06 10:08:37,310 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-3) Meth: interface ome.api.IRepositoryInfo.getUsedSpaceInKilobytes<BR>
2009-11-06 10:08:37,311 INFO [ ome.services.util.ServiceHandler] (l.Serv<BR>
er-3) Args: ()<BR>
2009-11-06 10:08:37,333 INFO [ ome.security.basic.EventHandler] (l.Serv<BR>
er-3) Auth: user=0,group=0,event=146614(Internal),sess=1eb7cc94-007e-4414-ba<BR>
9f-6bbb65ee49ae<BR>
2009-11-06 10:08:53,402 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:08:53,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:09:00,019 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Work<BR>
er-0) Performing requestHeartbeats<BR>
2009-11-06 10:09:20,118 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Serv<BR>
er-1) Keep alive: 302fda6d-3ef5-4fcb-b0d2-c6979a1852a8<BR>
2009-11-06 10:09:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:09:23,403 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
2009-11-06 10:09:53,406 WARN [ java.util.prefs] ( Tim<BR>
er-0) Could not lock System prefs. Unix error code 0.<BR>
2009-11-06 10:09:53,407 WARN [ java.util.prefs] ( Tim<BR>
er-0) Couldn't flush system prefs: java.util.prefs.BackingStoreException: Couldn<BR>
't get file lock.<BR>
[mrmike@cisrome omero_dist]$ <BR>
<BR>
<BR>
<BR>
Output of df-k:<BR>
<BR>
[mrmike@cisrome OMEROOLD]$ df -k /OMERODIR<BR>
Filesystem 1K-blocks Used Available Use% Mounted on<BR>
//bluearc.mc.vanderbilt.edu/cisrweb<BR>
6442450944 5952519104 489931840 93% /OMERODIR<BR>
<BR>
<BR>
<BR>
Michael J. McCaughey, PhD<BR>
Molecular Physiology and Biophysics<BR>
U9203 MRBIII<BR>
6-6175<BR>
<BR>
<BR>
<BR>
-----Original Message-----<BR>
From: Chris Allan [<A HREF="mailto:callan@lifesci.dundee.ac.uk">mailto:callan@lifesci.dundee.ac.uk</A>]<BR>
Sent: Fri 11/6/2009 6:51 AM<BR>
To: McCaughey, Michael J<BR>
Subject: Re: [ome-users] Repository on share?<BR>
<BR>
Hi Mike,<BR>
<BR>
We regularly run repositories on shares, just not CIFS. Few things:<BR>
<BR>
* Can you send us the output of "bin/omero admin diagnostics"?<BR>
<BR>
* After attempting to view disk size, can you also have a look in var/<BR>
log/Blitz-0.log to see if there is an exception there?<BR>
<BR>
* What does df -k /path/to/repository show?<BR>
<BR>
-Chris<BR>
<BR>
On 2 Nov 2009, at 18:34, McCaughey, Michael J wrote:<BR>
<BR>
> I'm attempting to host an Omero4.1.0 server data repository on a <BR>
> cifs-mounted network share. The share is owned by the same user <BR>
> that is running omero. On startup, the user runs with no logged <BR>
> errors related to the repository. While I can create (empty) <BR>
> projects and datasets using both Omero.insight and Omero.importer, I <BR>
> cannot import files because the importer cannot find the available <BR>
> disk size. Attempts to view disk size in any client (.insight or <BR>
> WedAdmin) timeout. When the repository is on a local disk (same <BR>
> permissions/owner) it works fine.<BR>
><BR>
> Does anyone with experience running the repository on a share have <BR>
> some insight into this?<BR>
><BR>
> Thanks,<BR>
> Mike<BR>
><BR>
> VUMC<BR>
><BR>
> _______________________________________________<BR>
> ome-users mailing list<BR>
> ome-users@lists.openmicroscopy.org.uk<BR>
> <A HREF="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</A><BR>
<BR>
<BR>
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