[ome-users] OMERO not starting

[Björn Quast]

Hi Berni,

I am not sure, but the 
> icegridnode: failure occurred in daemon
may meens that the icegridnode daemon is running. When I got the failure I 
also tried to delete the var directory but it did not help. So I figured out, 
that I can stop the daemon with:
  
bin/omero admin stop

Then I was able to start it again with

bin/omero admin start


Rerunning the
 psql -h localhost -U omero omero < OMERO4__0.sql
may fails because of the postgres database was filled with tables and data 
before.

In my attemps to start the server at the end I drop the database and the user 
with

sudo -u postgres dropdb omero
sudo -u postgres dropuser omero

and the omero_dist directory and do a new installation starting with

sudo -u postgres createdb -O omero omero
...

When I take the same user and password for the postgres database and in the 
bin/omero config set 
scripts, but a different password for root in 
bin/omero db script

I was able to start the server.


Hope that helps you

Björn






> Building another OMERO server and having problems starting:
>
> On CENTOS 5.3 64bit:
>
> [omero at gdsc13 omero_dist]$ bin/omero admin start
> Creating /home/omero/omero_dist/var/master
> Initializing /home/omero/omero_dist/var/log
> Creating /home/omero/omero_dist/var/registry
> No descriptor given. Using etc/grid/default.xml
> icegridnode: failure occurred in daemon
>
> I've tried deleting the entire var directory and get the same error.
>
> PostgreSQL is listening:
> [root at gdsc13 ~]# netstat -an | grep '5432.*LISTEN'
> tcp        0      0 127.0.0.1:5432              0.0.0.0:*
> LISTEN
>
> OMERO exists and has the right permissions:
> drwxr-xr-x   4 omero omero  4096 Jun 12 13:32 OMERO
>
> One thing I did this time was create a partition /OMERO. Thought it was
> sensible :-/
>
> Re-running:
> [omero at gdsc13 omero_dist]$ psql -h localhost -U omero omero < OMERO4__0.sql
>
> gives lots of:
> ERROR:  current transaction is aborted, commands ignored until end of
> transaction block
>
> and a final:
> ROLLBACK.
>
> The initial attempt to start the server just timed out.
>
> Bernie
>
> Bernie Broughton
> IT Manager
> Genome Damage and Stability Centre
> University of Sussex
> http://www.sussex.ac.uk/USIS/phone/details.php?id=19643
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users


-- 
Dr. Björn Quast
Universität Bonn
Institut für Evolutionsbiologie und Ökologie  
53121 Bonn
Tel.: 0228/735758   email: bquast at evolution.uni-bonn.de
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