<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd"><html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'DejaVu Sans'; font-size:9pt; font-weight:400; font-style:normal;">Hi Berni,<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>I am not sure, but the <br>
> icegridnode: failure occurred in daemon<br>
may meens that the icegridnode daemon is running. When I got the failure I also tried to delete the var directory but it did not help. So I figured out, that I can stop the daemon with:<br>
<br>
bin/omero admin stop<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>Then I was able to start it again with<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>bin/omero admin start<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>Rerunning the<br>
psql -h localhost -U omero omero < OMERO4__0.sql<br>
may fails because of the postgres database was filled with tables and data before.<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>In my attemps to start the server at the end I drop the database and the user with<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>sudo -u postgres dropdb omero<br>
sudo -u postgres dropuser omero<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>and the omero_dist directory and do a new installation starting with<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><span style=" font-family:'Courier New,courier';">sudo -u postgres createdb -O omero omero</span><br>
<pre style=" margin-top:0px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><span style=" font-family:'Courier New,courier';">...</span></pre><pre style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"></pre><pre style=" margin-top:0px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><span style=" font-family:'Courier New,courier';">When I take the same user and password for the postgres database and in the </span></pre><pre style=" margin-top:0px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><span style=" font-family:'Courier New,courier';">bin/omero config set </span></pre><pre style=" margin-top:0px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><span style=" font-family:'Courier New,courier';">scripts, but a different password for root in </span></pre><span style=" font-family:'Courier New,courier';">bin/omero db script</span><br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><span style=" font-family:'Courier New,courier';">I was able to start the server.</span><br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><span style=" font-family:'Courier New,courier';">Hope that helps you</span><br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><span style=" font-family:'Courier New,courier';">Björn</span><br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0; font-family:'Courier New,courier';"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>> Building another OMERO server and having problems starting:<br>
><br>
> On CENTOS 5.3 64bit:<br>
><br>
> [omero@gdsc13 omero_dist]$ bin/omero admin start<br>
> Creating /home/omero/omero_dist/var/master<br>
> Initializing /home/omero/omero_dist/var/log<br>
> Creating /home/omero/omero_dist/var/registry<br>
> No descriptor given. Using etc/grid/default.xml<br>
> icegridnode: failure occurred in daemon<br>
><br>
> I've tried deleting the entire var directory and get the same error.<br>
><br>
> PostgreSQL is listening:<br>
> [root@gdsc13 ~]# netstat -an | grep '5432.*LISTEN'<br>
> tcp 0 0 127.0.0.1:5432 0.0.0.0:*<br>
> LISTEN<br>
><br>
> OMERO exists and has the right permissions:<br>
> drwxr-xr-x 4 omero omero 4096 Jun 12 13:32 OMERO<br>
><br>
> One thing I did this time was create a partition /OMERO. Thought it was<br>
> sensible :-/<br>
><br>
> Re-running:<br>
> [omero@gdsc13 omero_dist]$ psql -h localhost -U omero omero < OMERO4__0.sql<br>
><br>
> gives lots of:<br>
> ERROR: current transaction is aborted, commands ignored until end of<br>
> transaction block<br>
><br>
> and a final:<br>
> ROLLBACK.<br>
><br>
> The initial attempt to start the server just timed out.<br>
><br>
> Bernie<br>
><br>
> Bernie Broughton<br>
> IT Manager<br>
> Genome Damage and Stability Centre<br>
> University of Sussex<br>
> http://www.sussex.ac.uk/USIS/phone/details.php?id=19643<br>
> _______________________________________________<br>
> ome-users mailing list<br>
> ome-users@lists.openmicroscopy.org.uk<br>
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p><p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; -qt-user-state:0;"><br></p>-- <br>
Dr. Björn Quast<br>
Universität Bonn<br>
Institut für Evolutionsbiologie und Ökologie <br>
53121 Bonn<br>
Tel.: 0228/735758 email: bquast@evolution.uni-bonn.de</p></body></html>