[ome-users] OMERO not starting

Bernie Broughton b.broughton at sussex.ac.uk
Fri Jun 12 13:02:31 BST 2009


Building another OMERO server and having problems starting:

On CENTOS 5.3 64bit:

[omero at gdsc13 omero_dist]$ bin/omero admin start
Creating /home/omero/omero_dist/var/master
Initializing /home/omero/omero_dist/var/log
Creating /home/omero/omero_dist/var/registry
No descriptor given. Using etc/grid/default.xml
icegridnode: failure occurred in daemon

I've tried deleting the entire var directory and get the same error.

PostgreSQL is listening:
[root at gdsc13 ~]# netstat -an | grep '5432.*LISTEN'
tcp        0      0 127.0.0.1:5432              0.0.0.0:* 
LISTEN

OMERO exists and has the right permissions:
drwxr-xr-x   4 omero omero  4096 Jun 12 13:32 OMERO

One thing I did this time was create a partition /OMERO. Thought it was 
sensible :-/

Re-running:
[omero at gdsc13 omero_dist]$ psql -h localhost -U omero omero < OMERO4__0.sql

gives lots of:
ERROR:  current transaction is aborted, commands ignored until end of 
transaction block

and a final:
ROLLBACK.

The initial attempt to start the server just timed out.

Bernie

Bernie Broughton
IT Manager
Genome Damage and Stability Centre
University of Sussex
http://www.sussex.ac.uk/USIS/phone/details.php?id=19643



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