[ome-users] Slidebook sld file opening error

[Alex Sossick]

Hi Melissa 

Thanks for that

This does raise another question about being able to delete files from
omero, as  in this case the files have partially loaded into omero and are
corrupted. 

Is there away to delete files, (or will there be)

Thanks

Alex



Melissa Linkert at melissa at glencoesoftware.com wrote on 21/7/09 19:36:

> Hi Alex,
> 
> Thanks again for reporting this, and for sending the problematic file
> off-list.
> 
> The latest trunk build of Bio-Formats contains several fixes that allow your
> Slidebook file to be read.  You can download the latest trunk build at
> http://loci.wisc.edu/ome/formats-download.html.
> 
> However, OMERO.importer has not been updated to include these fixes, so you
> will 
> not yet be able to import the file into OMERO.
> 
> Regards,
> -Melissa
> 
> Melissa Linkert wrote:
>> Hi Alex,
>> 
>> Thanks for reporting this - it's definitely a bug in Bio-Formats.  If
>> possible, it would be very helpful if you could send the problematic
>> file, as all of the Slidebook files we have are opened correctly.  I
>> will send you our FTP server information off list, in case you need a
>> place to put the file.
>> 
>>> On the subject are there any plans to support the import of spool
>> files from
>>> slidebook?
>> 
>> We can certainly add support for Slidebook spool files, but would need a
>> few example files in order to do so.
>> 
>> Regards,
>> -Melissa
>> 
>> Alex Sossick wrote:
>>> Dear All
>>> 
>>> I was wondering whether anyone had encountered any issues opening
>>> slidebook
>>> .sld files
>>> I have a single channel file that is just over 1Gb (the smallest I could
>>> get) and it seems to read part way and then say its unreadable.
>>> 
>>> I notice in the logs it appears to be opening the time points as
>>> channels.
>>> (see below)
>>> 
>>> On the subject are there any plans to support the import of spool
>>> files from
>>> slidebook?
>>> 
>>> Alex
>>> 
>> 

-- 
Alex Sossick
Wellcome Trust/Cancer Research UK Gurdon Institute
University of Cambridge
Tennis Court Rd
Cambridge CB2 1QN
UK

email ajs17 at cam.ac.uk
tel 01223 334082