[ome-users] Beta 3.1.1 does not start

Chris Allan callan at blackcat.ca
Fri Oct 17 08:19:09 BST 2008


Hi Alex,

That's for ensuring that your Linux host can resolve its own name  
correctly. You put **your** hostname and IP address there not "omero- 
test".

Ciao.

-Chris

On 17 Oct 2008, at 02:52, Alexandre Cunha wrote:

> Josh,
>
> We finally managed to get the new version installed. NOTHING was wrong
> with OMERO. It took us a while to find out that a nfs file was locking
> for unknown reasons (maybe a redhat bug!) and apparently that  
> prevented
> the server to start normally. The problem has been fixed (or partially
> fixed since we do still need to find out how to resolve the locking
> problem). All mistakes are from our side, none from the omero code.
>
> Thanks for the help and for making OMERO available.
>
> One issue that is somehow of concern to our networking experts is  
> why we
> have to explicitly add
>
> #A.B.C.D        omero-test.openmicroscopy.org.uk omero-test
>
> in /etc/hosts, kind of hardcoding the omero-... names. Any comments on
> the security of that ?
>
> Cheers,
> - Alex.
>
>
> josh.moore at gmx.de wrote:
>> Alexandre Cunha writes:
>>> Hi Josh,
>>
>> Hi.
>>
>>> Thanks for replying. We are doing a brand new installation, from
>>> scratch, so we are not upgrading any database.
>>
>> Understood. I misunderstood your email, sorry.
>>
>>> Hopefully the log file I sent you reveal our mistakes!
>>
>> Actually, whether from a fresh install or an upgrade, it still looks
>> like JBoss has got itself into a very unhealthy state. Can you try
>> re-creating that directory and then repeat these steps:
>>
>>  cd ~/Desktop/omero-Beta3.1/omero
>>  export JBOSS_HOME=~/Desktop/omero-Beta3.1/jboss-4.2.3.GA
>>  java omero deploy
>>  $JBOSS_HOME/bin/run.sh
>>
>> Thanks,
>> ~Josh.
>>
>>> Cheers,
>>> - Alex.
>>>
>>> josh.moore at gmx.de wrote:
>>>> Hello Alexandre,
>>>>
>>>> The error that you and Mario reported will show up any time the  
>>>> server
>>>> doesn't start, and is not directly related to the upgrade. I'm
>>>> assuming the database upgrade script completed successfully for
>>>> you. If so, could you perhaps send us the contents of
>>>> jboss-4.2.3.GA/server/default/log/server.log Thanks!
>>>>
>>>> Best wishes,
>>>> ~Josh.
>>>>
>>>> Alexandre Cunha writes:
>>>>> Mario,
>>>>>
>>>>> Just now after revisiting the recent emails sent to ome-users  
>>>>> list I
>>>>> realized that the problem I just reported is actually the same  
>>>>> one you
>>>>> reported yesterday (msg below). We did upgrade postgres,
>>>>>
>>>>> cunha [68] : psql -V
>>>>> psql (PostgreSQL) 8.3.4
>>>>> contains support for command-line editing
>>>>>
>>>>> and have Java 1.6
>>>>>
>>>>> cunha [69] : java -version
>>>>> java version "1.6.0_07"
>>>>> Java(TM) SE Runtime Environment (build 1.6.0_07-b06)
>>>>> Java HotSpot(TM) 64-Bit Server VM (build 10.0-b23, mixed mode)
>>>>>
>>>>> so I am wondering if in fact the upgrade is sufficient to solve  
>>>>> the
>>>>> problem or there is something else that needs to be worked on (?).
>>>>>
>>>>> Cheers,
>>>>> - Alex.
>>>>>
>>>>>
>>>>> Mario Valle wrote:
>>>>>> Dear all,
>>>>>> inital testing of 3.0.1 were successful. Now upgraded to 3.1.1  
>>>>>> and no
>>>>>> way to start the server.
>>>>>> OK, I was not able to upgrade the database due the SQL syntax  
>>>>>> error
>>>>>> (covered on another mail on the list).
>>>>>> I do not know if the hanging of the server during  
>>>>>> initialization is due
>>>>>> to the incomplete upgrade or not. But here it is.
>>>>>>
>>>>>> The last line of the server log  is:
>>>>>>
>>>>>> 10:30:41,434 INFO  [Log4jService$URLWatchTimerTask] Configuring  
>>>>>> from
>>>>>> URL: resource:jboss-log4j.xml
>>>>>>
>>>>>> If I try to connect using the WebAdmin interface, the message is:
>>>>>>
>>>>>> Connection failure: Error creating bean with name 'init'  
>>>>>> defined in
>>>>>> class path resource [ome/client/spring.xml]: Cannot resolve  
>>>>>> reference to
>>>>>> bean 'managed-ome.api.ISession' while setting bean property
>>>>>> 'sessionService'; nested exception is
>>>>>> org.springframework.beans.factory.BeanCreationException: Error  
>>>>>> creating
>>>>>> bean with name 'managed-ome.api.ISession': FactoryBean threw  
>>>>>> exception
>>>>>> on object creation; nested exception is  
>>>>>> ome.client.OutOfService: Cannot
>>>>>> initialize service proxy
>>>>>>
>>>>>> Thanks for your help!
>>>>>>                                          mario
>>>>
>>
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