[ome-users] NIA Image Tables and Images.

[Kasthuri Srinivasan Kannan]

Thanks Ilya. Yes, I did not install our OME. I came to know from our installer that there are conflicts with the version of perl on OME and the version on our network path. I have to add some things to my .profile file. Currently, I am out of town and so will have to wait till I get back (I don't have access to our network from outside). Will do that and let you know whether that works after I get back.

-Kasthuri

----- Original Message ----
From: Ilya Goldberg <igg at nih.gov>
To: Kasthuri Srinivasan Kannan <kasthurisrinivasan at yahoo.com>
Cc: ome-users at lists.openmicroscopy.org.uk
Sent: Monday, January 28, 2008 11:44:44 AM
Subject: Re: [ome-users] NIA Image Tables and Images.


This 
result 
indicates 
that 
there 
are 
some 
very 
strange 
things 
going  
on 
with 
your 
OME 
system, 
or 
possibly 
in 
how 
you're 
using 
it.

The 
scripts 
that 
need 
to 
be 
executed 
(dgas-templates.pl,  
parseDGASannotations.pl) 
have 
to 
be 
executed 
on 
the 
very 
same 
OME  
system 
that 
you're 
pointing 
your 
browser 
at.  
It 
appears 
that 
there  
are 
two 
separate 
OME 
systems 
in 
play 
here.  
One 
is 
in 
somewhere 
in 
/n/ 
site/inst/ 
(from 
the 
command 
line 
errors), 
and 
another 
one 
is  
somewhere 
in 
/usr/lib/perl5/site_perl/ 
(from 
the 
browser 
error).

I 
don't 
know 
what 
was 
done 
to 
get 
to 
this 
state, 
but 
this 
isn't 
going  
to 
work 
unless 
you're 
talking 
to 
the 
very 
same 
OME 
system 
from 
your  
browser 
and 
from 
the 
command 
line, 
and 
this 
doesn't 
appear 
to 
be 
the  
case.

I 
seem 
to 
remember 
you 
mentioned 
that 
someone 
else 
has 
installed 
this  
for 
you?

-Ilya


On 
Jan 
25, 
2008, 
at 
8:15 
PM, 
Kasthuri 
Srinivasan 
Kannan 
wrote:

> 
When 
I 
try 
to 
run 
the 
script 
"perl 
dgas-templates.pl" 
after  
> 
creating 
a 
user 
name 
I 
get 
this 
error:
>
> 
--------------------------------------------------
> 
Can't 
locate 
loadable 
object 
for 
module 
OME::Image::Pix 
in 
@INC  
> 
(@INC 
contains: 
/n/site/inst/Linux-i686/bioinfo/seals/lib/perl 
/n/ 
> 
site/inst/shared/sys/lib/perl5/5.8.8/i686-linux-thread-multi-ld 
/n/ 
> 
site/inst/shared/sys/lib/perl5/5.8.8 
/n/site/inst/shared/sys/lib/ 
> 
perl5/site_perl/5.8.8/i686-linux-thread-multi-ld 
/n/site/inst/ 
> 
shared/sys/lib/perl5/site_perl/5.8.8 
/n/site/inst/shared/sys/lib/ 
> 
perl5/site_perl/5.8.6 
/n/site/inst/shared/sys/lib/perl5/ 
> 
site_perl 
..) 
at 
/n/site/inst/shared/sys/lib/perl5/site_perl/5.8.6/ 
> 
OME/Image/LocalPixels.pm 
line 
50
> 
Compilation 
failed 
in 
require 
at 
/n/site/inst/shared/sys/lib/perl5/ 
> 
site_perl/5.8.6/OME/Image/LocalPixels.pm 
line 
50.
> 
BEGIN 
failed--compilation 
aborted 
at 
/n/site/inst/shared/sys/lib/ 
> 
perl5/site_perl/5.8.6/OME/Image/LocalPixels.pm 
line 
50.
> 
Compilation 
failed 
in 
require 
at 
/n/site/inst/shared/sys/lib/perl5/ 
> 
site_perl/5.8.6/OME/Tasks/PixelsManager.pm 
line 
56.
> 
BEGIN 
failed--compilation 
aborted 
at 
/n/site/inst/shared/sys/lib/ 
> 
perl5/site_perl/5.8.6/OME/Tasks/PixelsManager.pm 
line 
56.
> 
Compilation 
failed 
in 
require 
at 
/n/site/inst/shared/sys/lib/perl5/ 
> 
site_perl/5.8.6/OME/Tasks/ImageTasks.pm 
line 
45.
> 
BEGIN 
failed--compilation 
aborted 
at 
/n/site/inst/shared/sys/lib/ 
> 
perl5/site_perl/5.8.6/OME/Tasks/ImageTasks.pm 
line 
45.
> 
Compilation 
failed 
in 
require 
at 
dgas-templates.pl 
line 
9.
> 
BEGIN 
failed--compilation 
aborted 
at 
dgas-templates.pl 
line 
9.
> 
----------------------------------------------------
>
> 
Can 
somebody 
help 
me 
out 
here 
?  
Our 
OME 
is 
running 
in 
CentOS  
> 
release 
5.
>
> 
Thanks.
> 
Kasthuri
>






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