[ome-users] NIA Image Tables and Images.

[Ilya Goldberg]

This result indicates that there are some very strange things going  
on with your OME system, or possibly in how you're using it.

The scripts that need to be executed (dgas-templates.pl,  
parseDGASannotations.pl) have to be executed on the very same OME  
system that you're pointing your browser at.  It appears that there  
are two separate OME systems in play here.  One is in somewhere in /n/ 
site/inst/ (from the command line errors), and another one is  
somewhere in /usr/lib/perl5/site_perl/ (from the browser error).

I don't know what was done to get to this state, but this isn't going  
to work unless you're talking to the very same OME system from your  
browser and from the command line, and this doesn't appear to be the  
case.

I seem to remember you mentioned that someone else has installed this  
for you?

-Ilya


On Jan 25, 2008, at 8:15 PM, Kasthuri Srinivasan Kannan wrote:

> When I try to run the script "perl dgas-templates.pl" after  
> creating a user name I get this error:
>
> --------------------------------------------------
> Can't locate loadable object for module OME::Image::Pix in @INC  
> (@INC contains: /n/site/inst/Linux-i686/bioinfo/seals/lib/perl /n/ 
> site/inst/shared/sys/lib/perl5/5.8.8/i686-linux-thread-multi-ld /n/ 
> site/inst/shared/sys/lib/perl5/5.8.8 /n/site/inst/shared/sys/lib/ 
> perl5/site_perl/5.8.8/i686-linux-thread-multi-ld /n/site/inst/ 
> shared/sys/lib/perl5/site_perl/5.8.8 /n/site/inst/shared/sys/lib/ 
> perl5/site_perl/5.8.6 /n/site/inst/shared/sys/lib/perl5/ 
> site_perl .) at /n/site/inst/shared/sys/lib/perl5/site_perl/5.8.6/ 
> OME/Image/LocalPixels.pm line 50
> Compilation failed in require at /n/site/inst/shared/sys/lib/perl5/ 
> site_perl/5.8.6/OME/Image/LocalPixels.pm line 50.
> BEGIN failed--compilation aborted at /n/site/inst/shared/sys/lib/ 
> perl5/site_perl/5.8.6/OME/Image/LocalPixels.pm line 50.
> Compilation failed in require at /n/site/inst/shared/sys/lib/perl5/ 
> site_perl/5.8.6/OME/Tasks/PixelsManager.pm line 56.
> BEGIN failed--compilation aborted at /n/site/inst/shared/sys/lib/ 
> perl5/site_perl/5.8.6/OME/Tasks/PixelsManager.pm line 56.
> Compilation failed in require at /n/site/inst/shared/sys/lib/perl5/ 
> site_perl/5.8.6/OME/Tasks/ImageTasks.pm line 45.
> BEGIN failed--compilation aborted at /n/site/inst/shared/sys/lib/ 
> perl5/site_perl/5.8.6/OME/Tasks/ImageTasks.pm line 45.
> Compilation failed in require at dgas-templates.pl line 9.
> BEGIN failed--compilation aborted at dgas-templates.pl line 9.
> ----------------------------------------------------
>
> Can somebody help me out here ?  Our OME is running in CentOS  
> release 5.
>
> Thanks.
> Kasthuri
>