[ome-users] Help with OME installation on Fedora Core 6, (mod_perl not configured error...)
Jerome Avondo
jeromeavondo at msn.com
Mon Jan 21 16:32:19 GMT 2008
Hello,
Been trying to get the OME server up and running on a fresh Fedora core 6 installation.
However I am having an error with the install.pl script at the APACHE SETUP stage.
You can find the complete install log at the end of this message.
Basically it seems that its complaining about mod_perl not being configured correctly.
The exact error message I get is: "Errors executing task: Apache/mod_perl is not properly configured."
when I run "yum list mod_perl" mod_perl is shown as installed and the version number is 2.0.2-6.2.fc6
Anybody have any suggestion about how to go about sorting this problem? Do I have to do anything more to setup mod_perl correctly?
many thanks,
j.
--------------------------------------
COMPLETE INSTALL LOG:
--------------------------------------
[root at JIC4367 OME-2.6.1]# perl install.pl
------------------
Pre-Installation
------------------
Term::ReadKey - Version 2.30
Storable - Version 2.15
----------------------------
C Library Dependency Setup
----------------------------
(All verbose information logged in /var/tmp/ome-lib-check/LibraryTask.log)
Checking libraries
\_ libssl 0.9.8 [OK].
\_ libpng 1.2.10 [OK].
\_ libjpeg 62 [OK].
\_ libcurl 7.15.5 [OK].
\_ libtiff 3.8.2 [OK].
\_ zlib 1.2.3 [OK].
\_ libdb_B-Tree 3 [OK].
\_ libxml2 2.6.26 [OK].
\_ libxslt 1.1.17 [OK].
\_ expat 1.95 [OK].
\_ bzlib N/A [OK].
-------------------
Core System Setup
-------------------
Dropping umask to "0002".
This part of the OME install will collect the initial information required.
Basic directory structure and system users will be created and the install
environment setup. If you are unsure of a particular question, please
choose the default as that will be more than adequate for most people.
Base OME directory: /OME
Base OMEIS directory: /OME/OMESIS
Base temporary directory: /var/tmp/OME
OME groupname: ome
OME Unix username: ome
Apache Unix username: apache
Postgres admin username: postgres
OME Unix admin username: ut
Are these values correct ? [y/n]: y
Building the core system
\_ Checking directory "/OME".
\_ Checking child "/OME/xml".
\_ Checking child "/OME/bin".
\_ Checking child "/OME/perl2".
\_ Checking child "/OME/cgi".
\_ Checking child "/OME/crontab".
\_ Checking child "/OME/matlab".
\_ Checking child "/OME/Inline".
\_ Checking child "/OME/lib".
\_ Checking child "/OME/java".
\_ Checking directory "/OME/OMESIS".
\_ Checking child "/OME/OMESIS/Files".
\_ Checking child "/OME/OMESIS/Pixels".
\_ Checking directory "/var/tmp/OME".
\_ Checking child "/var/tmp/OME/lock".
\_ Checking child "/var/tmp/OME/sessions".
\_ Checking child "/var/tmp/OME/install".
Copying stylesheets
\_ src/xml/xslt/OME-CA2OME.xslt
\_ src/xml/xslt/OME2OME-CA.xslt
Copying IMAGE directories
\_ images
Copying CONFIG directories
\_ conf
Copying HTML directories
\_ JavaScript
\_ html
-------------------
Core Binary Setup
-------------------
(All verbose information logged in /var/tmp/OME/install/BinaryBuilds.log)
OME can optionally be configured to work with BioFormats which is an
external Java library that can read 50+ common microscopy file formats.
BioFormats requires Sun Java, but if you don't need BioFormats you can
continue the install without Sun Java.
Installing BioFormats
\_ Checking for Sun Java [FOUND].
\_ Checking for /OME/java/loci_tools.jar [FOUND].
Installing OMEIS
\_ Configuring [SUCCESS].
\_ Compiling [SUCCESS].
\_ Installing [SUCCESS].
Installing omeis-http
\_ Configuring [SUCCESS].
\_ Compiling [SUCCESS].
Installing core binaries
\_ Compiling [SUCCESS].
\_ Installing [SUCCESS].
------------------------------
Perl Module Dependency Setup
------------------------------
(All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)
Checking modules
\_ Term::ReadKey 2.30 [OK].
\_ Storable 2.15 [OK].
\_ Carp::Assert 0.18 [OK].
\_ Compress::Zlib 1.42 [OK].
\_ DBI 1.52 [OK].
\_ Digest::MD5 2.36 [OK].
\_ MD5 [OK].
\_ MIME::Base64 3.07 [OK].
\_ Log::Agent 0.306 [OK].
\_ Time::HiRes 1.86 [OK].
\_ Date::Parse 2.27 [OK].
\_ DBD::Pg 1.43 [OK].
\_ Test::Harness 2.56 [OK].
\_ Test::Simple 0.62 [OK].
\_ HTML::Template 2.7 [OK].
\_ IPC::Run 0.79 [OK].
\_ Class::Accessor 0.19 [OK].
\_ Class::Data::Inheritable 0.02 [OK].
\_ File::Temp 0.16 [OK].
\_ Exporter::Lite 0.01 [OK].
\_ UNIVERSAL::exports 0.03 [OK].
\_ URI 1.35 [OK].
\_ HTML::Tagset 3.10 [OK].
\_ HTML::Parser 3.55 [OK].
\_ Parse::RecDescent 1.94 [OK].
\_ Inline::C 0.44 [OK].
\_ XML::NamespaceSupport 1.09 [OK].
\_ XML::Sax 1.01 [OK].
\_ XML::LibXML::Common 0.13 [OK].
\_ XML::LibXML 1.62 [OK].
\_ XML::Parser 2.34 [OK].
\_ SOAP::Lite 0.60 [OK].
\_ XML::LibXSLT 1.58 [OK].
\_ OLE::Storage_Lite 0.14 [OK].
\_ Spreadsheet::ParseExcel 0.2603 [OK].
------------------------
Core Perl Module Setup
------------------------
(All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)
Installing modules
\_ Configuring [SUCCESS].
\_ Compiling [SUCCESS].
\_ Installing [SUCCESS].
Use of uninitialized value in concatenation (.) or string at /home/ut/Desktop/OME-2.6.1/src/perl2/OME/Install/ApacheConfigTask.pm line 75.
--------------
Apache Setup
--------------
(All verbose information logged in /var/tmp/OME/install/ApacheConfigTask.log)
OME Apache web server configuration is a critical part of your OME install.
OME's web interface, remote clients and image server all use this
infrastructure to communicate. If you are unsure of a particular question,
please choose the default as that will be more than adequate for most
people.
Apache configuration:
Configure Apache?: yes
Developer configuration: no
Server restart?: yes
Install OME servers:
Images (omeis): yes
Data (omeds): yes
Web: yes
Apache directories:
httpd binary: /usr/sbin/httpd
apachectl binary: /usr/sbin/apachectl
DocumentRoot: /var/www/html
cgi-bin: /var/www/cgi-bin/
Web-UI HTML Templates:
Developer configuration: no
Are these values correct ? [y/n]: y
[Mon Jan 21 16:14:00 2008] [warn] The ScriptAlias directive in /OME/conf/httpd2.omeis.conf at line 2 will probably never match because it overlaps an earlier ScriptAlias.
Testing Apache configuration
\__ mod_perl [FAILURE].
Errors executing task: Apache/mod_perl is not properly configured. Got an error response from http://localhost/perl2/mod_perl_test.pl:
ERROR: The requested URL could not be retrieved
ERROR
The requested URL could not be retrieved
While trying to retrieve the URL:
http://localhost/perl2/mod_perl_test.pl
The following error was encountered:
Connection Failed
The system returned:
(111) Connection refused
The remote host or network may be down. Please try the request again.
Your cache administrator is webmstr at bbsrc.ac.uk.
Generated Mon, 21 Jan 2008 16:13:28 GMT by BBSRC-wwwcache-service (squid/2.5.STABLE9)
See /var/tmp/OME/install/ApacheConfigTask.log for more details. at (eval 187) line 1
at install.pl line 82
main::run_tasks() called at install.pl line 266
# Looks like your test died before it could output anything.
_________________________________________________________________
Free games, great prizes - get gaming at Gamesbox.
http://www.searchgamesbox.com
More information about the ome-users
mailing list