[ome-users] Help with OME installation on Fedora Core 6, (mod_perl not configured error...)
Jerome Avondo
jeromeavondo at msn.com
Tue Jan 22 10:12:27 GMT 2008
hi,
Dont know if this helps but tried running the following below manually, once apache is started, and the script "seems" to work.
http://localhost/perl2/mod_perl_test.pl
I get the following output:
----------------------------------------------------------------
SCRIPT_NAME = /perl2/mod_perl_test.pl
SERVER_NAME = localhost
SERVER_ADMIN = root at localhost
HTTP_ACCEPT_ENCODING = gzip,deflate
HTTP_CONNECTION = keep-alive
REQUEST_METHOD = GET
HTTP_ACCEPT = text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5
SCRIPT_FILENAME = /OME/perl2/mod_perl_test.pl
SERVER_SOFTWARE = Apache/2.2.6 (Fedora)
HTTP_ACCEPT_CHARSET = ISO-8859-1,utf-8;q=0.7,*;q=0.7
QUERY_STRING =
REMOTE_PORT = 59930
HTTP_USER_AGENT = Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.8.0.7) Gecko/20061011 Fedora/1.5.0.7-7.fc6 Firefox/1.5.0.7
SERVER_PORT = 80
SERVER_SIGNATURE = Apache/2.2.6 (Fedora) Server at localhost Port 80
HTTP_ACCEPT_LANGUAGE = en-us,en;q=0.5
REMOTE_ADDR = 127.0.0.1
HTTP_KEEP_ALIVE = 300
SERVER_PROTOCOL = HTTP/1.1
PATH = /usr/bin/:/usr/local/bin/:/sw/bin/
MOD_PERL_API_VERSION = 2
REQUEST_URI = /perl2/mod_perl_test.pl
GATEWAY_INTERFACE = CGI/1.1
SERVER_ADDR = 127.0.0.1
DOCUMENT_ROOT = /var/www/html
HTTP_HOST = localhost
MOD_PERL = mod_perl/2.0.2
----------------------------------------------------------------
Also when I try and start/restart apache I get the following warning message:
" [warn] The ScriptAlias directive in /OME/conf/httpd2.omeis.conf at line 2 will probably never match because it overlaps an earlier ScriptAlias."
Also found a previous OME-USERS thread with similar symptoms too but wasnt much help, as it seems the user was running an old install.pl script... http://lists.openmicroscopy.org.uk/pipermail/ome-users/2005-July/000068.html
Well Im a bit stuck, if any expert has any suggestions/pointers, would be very greatful...
Regards,
J.
----------------------------------------
> From: jeromeavondo at msn.com
> To: ome-users at lists.openmicroscopy.org.uk
> Date: Mon, 21 Jan 2008 16:32:19 +0000
> Subject: Re: [ome-users] Help with OME installation on Fedora Core 6, (mod_perl not configured error...)
>
>
> Hello,
>
> Been trying to get the OME server up and running on a fresh Fedora core 6 installation.
> However I am having an error with the install.pl script at the APACHE SETUP stage.
>
> You can find the complete install log at the end of this message.
>
> Basically it seems that its complaining about mod_perl not being configured correctly.
> The exact error message I get is: "Errors executing task: Apache/mod_perl is not properly configured."
>
> when I run "yum list mod_perl" mod_perl is shown as installed and the version number is 2.0.2-6.2.fc6
>
> Anybody have any suggestion about how to go about sorting this problem? Do I have to do anything more to setup mod_perl correctly?
>
> many thanks,
>
> j.
>
> --------------------------------------
> COMPLETE INSTALL LOG:
> --------------------------------------
>
> [root at JIC4367 OME-2.6.1]# perl install.pl
> ------------------
> Pre-Installation
> ------------------
>
> Term::ReadKey - Version 2.30
> Storable - Version 2.15
>
> ----------------------------
> C Library Dependency Setup
> ----------------------------
>
> (All verbose information logged in /var/tmp/ome-lib-check/LibraryTask.log)
>
> Checking libraries
> \_ libssl 0.9.8 [OK].
> \_ libpng 1.2.10 [OK].
> \_ libjpeg 62 [OK].
> \_ libcurl 7.15.5 [OK].
> \_ libtiff 3.8.2 [OK].
> \_ zlib 1.2.3 [OK].
> \_ libdb_B-Tree 3 [OK].
> \_ libxml2 2.6.26 [OK].
> \_ libxslt 1.1.17 [OK].
> \_ expat 1.95 [OK].
> \_ bzlib N/A [OK].
>
> -------------------
> Core System Setup
> -------------------
>
> Dropping umask to "0002".
>
> This part of the OME install will collect the initial information required.
> Basic directory structure and system users will be created and the install
> environment setup. If you are unsure of a particular question, please
> choose the default as that will be more than adequate for most people.
>
> Base OME directory: /OME
> Base OMEIS directory: /OME/OMESIS
> Base temporary directory: /var/tmp/OME
> OME groupname: ome
> OME Unix username: ome
> Apache Unix username: apache
> Postgres admin username: postgres
> OME Unix admin username: ut
>
> Are these values correct ? [y/n]: y
>
> Building the core system
> \_ Checking directory "/OME".
> \_ Checking child "/OME/xml".
> \_ Checking child "/OME/bin".
> \_ Checking child "/OME/perl2".
> \_ Checking child "/OME/cgi".
> \_ Checking child "/OME/crontab".
> \_ Checking child "/OME/matlab".
> \_ Checking child "/OME/Inline".
> \_ Checking child "/OME/lib".
> \_ Checking child "/OME/java".
> \_ Checking directory "/OME/OMESIS".
> \_ Checking child "/OME/OMESIS/Files".
> \_ Checking child "/OME/OMESIS/Pixels".
> \_ Checking directory "/var/tmp/OME".
> \_ Checking child "/var/tmp/OME/lock".
> \_ Checking child "/var/tmp/OME/sessions".
> \_ Checking child "/var/tmp/OME/install".
>
> Copying stylesheets
> \_ src/xml/xslt/OME-CA2OME.xslt
> \_ src/xml/xslt/OME2OME-CA.xslt
>
> Copying IMAGE directories
> \_ images
> Copying CONFIG directories
> \_ conf
> Copying HTML directories
> \_ JavaScript
> \_ html
>
> -------------------
> Core Binary Setup
> -------------------
>
> (All verbose information logged in /var/tmp/OME/install/BinaryBuilds.log)
>
> OME can optionally be configured to work with BioFormats which is an
> external Java library that can read 50+ common microscopy file formats.
> BioFormats requires Sun Java, but if you don't need BioFormats you can
> continue the install without Sun Java.
>
> Installing BioFormats
> \_ Checking for Sun Java [FOUND].
> \_ Checking for /OME/java/loci_tools.jar [FOUND].
> Installing OMEIS
> \_ Configuring [SUCCESS].
> \_ Compiling [SUCCESS].
> \_ Installing [SUCCESS].
> Installing omeis-http
> \_ Configuring [SUCCESS].
> \_ Compiling [SUCCESS].
> Installing core binaries
> \_ Compiling [SUCCESS].
> \_ Installing [SUCCESS].
>
> ------------------------------
> Perl Module Dependency Setup
> ------------------------------
>
> (All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)
>
> Checking modules
> \_ Term::ReadKey 2.30 [OK].
> \_ Storable 2.15 [OK].
> \_ Carp::Assert 0.18 [OK].
> \_ Compress::Zlib 1.42 [OK].
> \_ DBI 1.52 [OK].
> \_ Digest::MD5 2.36 [OK].
> \_ MD5 [OK].
> \_ MIME::Base64 3.07 [OK].
> \_ Log::Agent 0.306 [OK].
> \_ Time::HiRes 1.86 [OK].
> \_ Date::Parse 2.27 [OK].
> \_ DBD::Pg 1.43 [OK].
> \_ Test::Harness 2.56 [OK].
> \_ Test::Simple 0.62 [OK].
> \_ HTML::Template 2.7 [OK].
> \_ IPC::Run 0.79 [OK].
> \_ Class::Accessor 0.19 [OK].
> \_ Class::Data::Inheritable 0.02 [OK].
> \_ File::Temp 0.16 [OK].
> \_ Exporter::Lite 0.01 [OK].
> \_ UNIVERSAL::exports 0.03 [OK].
> \_ URI 1.35 [OK].
> \_ HTML::Tagset 3.10 [OK].
> \_ HTML::Parser 3.55 [OK].
> \_ Parse::RecDescent 1.94 [OK].
> \_ Inline::C 0.44 [OK].
> \_ XML::NamespaceSupport 1.09 [OK].
> \_ XML::Sax 1.01 [OK].
> \_ XML::LibXML::Common 0.13 [OK].
> \_ XML::LibXML 1.62 [OK].
> \_ XML::Parser 2.34 [OK].
> \_ SOAP::Lite 0.60 [OK].
> \_ XML::LibXSLT 1.58 [OK].
> \_ OLE::Storage_Lite 0.14 [OK].
> \_ Spreadsheet::ParseExcel 0.2603 [OK].
>
> ------------------------
> Core Perl Module Setup
> ------------------------
>
> (All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)
>
> Installing modules
> \_ Configuring [SUCCESS].
> \_ Compiling [SUCCESS].
> \_ Installing [SUCCESS].
> Use of uninitialized value in concatenation (.) or string at /home/ut/Desktop/OME-2.6.1/src/perl2/OME/Install/ApacheConfigTask.pm line 75.
>
> --------------
> Apache Setup
> --------------
>
> (All verbose information logged in /var/tmp/OME/install/ApacheConfigTask.log)
>
> OME Apache web server configuration is a critical part of your OME install.
> OME's web interface, remote clients and image server all use this
> infrastructure to communicate. If you are unsure of a particular question,
> please choose the default as that will be more than adequate for most
> people.
>
>
> Apache configuration:
> Configure Apache?: yes
> Developer configuration: no
> Server restart?: yes
> Install OME servers:
> Images (omeis): yes
> Data (omeds): yes
> Web: yes
> Apache directories:
> httpd binary: /usr/sbin/httpd
> apachectl binary: /usr/sbin/apachectl
> DocumentRoot: /var/www/html
> cgi-bin: /var/www/cgi-bin/
> Web-UI HTML Templates:
> Developer configuration: no
>
> Are these values correct ? [y/n]: y
> [Mon Jan 21 16:14:00 2008] [warn] The ScriptAlias directive in /OME/conf/httpd2.omeis.conf at line 2 will probably never match because it overlaps an earlier ScriptAlias.
> Testing Apache configuration
> \__ mod_perl [FAILURE].
>
>
> Errors executing task: Apache/mod_perl is not properly configured. Got an error response from http://localhost/perl2/mod_perl_test.pl:
>
> ERROR: The requested URL could not be retrieved
>
> ERROR
> The requested URL could not be retrieved
>
>
> While trying to retrieve the URL:
> http://localhost/perl2/mod_perl_test.pl
>
> The following error was encountered:
>
>
>
> Connection Failed
>
>
>
>
> The system returned:
> (111) Connection refused
>
>
> The remote host or network may be down. Please try the request again.
> Your cache administrator is webmstr at bbsrc.ac.uk.
>
>
>
>
> Generated Mon, 21 Jan 2008 16:13:28 GMT by BBSRC-wwwcache-service (squid/2.5.STABLE9)
>
>
>
> See /var/tmp/OME/install/ApacheConfigTask.log for more details. at (eval 187) line 1
>
> at install.pl line 82
> main::run_tasks() called at install.pl line 266
> # Looks like your test died before it could output anything.
>
>
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