[ome-users] new Sample.ome?

[Andrew Patterson]

Hello,

For the general list here is the sample block provided to Roy:

> <OME>
>     ...
>     <Image>
>         ...
>         <Pixels>
>             <Bin:BinData>... the plane's image data...</Bin:BinData>
>             <!-- or <TiffData/> -->
>             <Plane TheZ="1" TheT="3" TheC="2">
>                 <PlaneTiming
>                     DeltaT="0.24" (float - Units are seconds since  
> the beginning of the experiment)
>                     ExposureTime="0.025" (float - Units are seconds)
>                 /> (optional)
>                 <StagePosition
>                     PositionX="1.2"
>                     PositionY="1.3"
>                     PositionZ="1.1"
>                 /> (optional)
>             </Plane>
>         </Pixels>
>         (repeat for each set of pixels in the image)
>         ...
>     </Image>
>     ...
> </OME>

Hope this helps,

Andrew



On 7 Sep 2007, at 19:28, Roy Wollman wrote:

> Hi Andrew,
>
> Thanks for your prompt replay,
>
> I guess what I had most trouble with is understanding where to  
> store exposure time and other channel related stuff.
> I'm acquiring a 5D image set and I want to store the x,y,z,t,dt  
> (exposure) for each channel. What I understood from
> the website (http://cvs.openmicroscopy.org.uk/tiki/tiki-index.php? 
> page=OME-XML+Evolution#id458025)
> is that these type of data is stored as attributes for an optional  
> plane element but it wasn't totally clear to me how it should look.
>
> Is Plane an element inside image? am I allowed to have multiple of  
> those? How does this works?
>
> Thanks for your help,
>
> Roy
>
>
>
> Andrew Patterson wrote:
>> Hello Roy,
>>
>> I have updated the sample file for you. It is a minimal update to  
>> the original version. I would recommend looking at the changes in  
>> your favourite diff tool.
>> It is not a complete sample, I am working on one of these but if  
>> still needs more work.
>>
>> The new version of sample.ome is currently available at
>> http://www.ome-xml.org/browser/Xml/Working/sample-updated.ome.xml
>> This shows the new file structure but not all the data the file  
>> contains is valid as it was hand edited.
>>
>> Let me know if this is useful,
>>
>> Thanks,
>>
>> Andrew
>>
>>
>> On 7 Sep 2007, at 04:50, Roy Wollman wrote:
>>
>>> Hi,
>>>
>>> Is there a new Sample.ome file (the old one is at:
>>> www.openmicroscopy.org/XMLschemas/OME/latest/Sample.ome)
>>> somewhere that includes all the new features and changes to the  
>>> ome-xml
>>> schema?
>>>
>>> Thanks
>>> Roy
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>>