[ome-users] ivy dependancies

[McCaughey, Michael J]

I was just trying to compile the importer; I followed Chris's suggestion:
> ant clean
> ANT_OPTS="-Xmx512M" ant quick build
which got me past the ivy dependencies but blew up at the importer.

A normal install of the stable 3.0-M3 fails at anouther location (building romio.unit).

Such fun.

Thanks for any help.

Mike 

Michael J. McCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175



-----Original Message-----
From: Brian Loranger [mailto:brian.loranger at lifesci.dundee.ac.uk]
Sent: Tue 10/30/2007 8:03 AM
To: McCaughey, Michael J
Cc: Chris Allan; ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] ivy dependancies
 
Hi Michael,

I'm the "importer" guy for OMERO.

The OMERO.importer only uses a subset of the bio-formats library from  
loci, so if you're trying to compile the entire loci package, you  
will probably run into issues since they are constantly updating and  
changing their library and we mirror their full repository.

Instead, if you compile just the importer by itself, it should be  
able to build with all of the required bio-formats parts pretty  
reliably.

I'm also curious, were you using ant to do the import build? (Our svn  
maintainer is currently working on improving the ant build just now  
to handle loci more effectively).

Cheers,

Brian Loranger
Software Developer, Open Microscopy Environment
Division of Gene Regulation and Expression
University of Dundee



On 29 Oct 2007, at 19:26, McCaughey, Michael J wrote:

> That's a help.  Ignoring a few thousand warning messages, I get to  
> this error in the importer compile:
>
>
> generate:
>
> compile:
>     [javac] Compiling 25 source files to /home/mrmike/Documents/ 
> omero/components/importer/target/classes
>     [javac] ----------
>     [javac] 1. ERROR in /home/mrmike/Documents/omero/components/ 
> importer/src/loci/formats/ome/OMEXMLMetadata.java (at line 134)
>     [javac]     OMEXMLNode node = new CustomNode(el);
>     [javac]                           ^^^^^^^^^^
>     [javac] CustomNode cannot be resolved to a type
>
> any ideas on that one?
>
> Michael J. McCaughey, PhD
> Molecular Physiology and Biophysics
> U9203 MRBIII
> 6-6175
>
>
>
> -----Original Message-----
> From: Chris Allan [mailto:callan at blackcat.ca]
> Sent: Mon 10/29/2007 12:52 PM
> To: McCaughey, Michael J
> Cc: ome-users at lists.openmicroscopy.org.uk
> Subject: Re: [ome-users] ivy dependancies
>
>
> On 29 Oct 2007, at 17:15, McCaughey, Michael J wrote:
>
> > I'm trying to install OMERO from a current trunk checkout, but I
> > can't build it due to some missing depends related to ivy.  I've
> > poked around the SVN repository but couldn't find them.  Any
> > suggestions?  Error is attached below.
>
> Hi Mike.
>
> The build system is in a bit of flux at the moment (we're trying to
> remove some of the dependencies on the actual omero.class). Can you
> try the following?
>
> ant clean
> ANT_OPTS="-Xmx512M" ant quick build
>
> >
> > Mike
>
> Ciao.
>
> -Chris
>
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20071030/da2839a1/attachment.html>